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Name : lysS (M621_20655) Accession : YP_008160892.1 Strain : Serratia plymuthica S13 Genome accession: NC_021659 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 4354286 - 4355803 bp Length : 1518 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTGAGCAACAACCACAGGGCGCCGATCAGGCGTTGGAACTCAATAACGAGTTGCAGTCACGCCGTGAGAAACTGGC CGGGCTGCGCGAGAACGGCATTGCGTTCCCGAATGATTTCCGTCGCGACACCACGTCCGACAAGCTGCACGCTGCATACG GCGATAAAGATAACGAAGAGCTGGAAGCGCTGGGCGTAGAAGTTACCGTTGCAGGCCGCATGATGACCCGTCGTATCATG GGTAAAGCGTCATTCGTGACGTTGCAGGACGTCGGCGGCCGTATCCAGCTTTACGTCGCGCGCGACGATCTGGCGGAAGG CGTTTATAACGAGCAGTTCAAGAAGTGGGATCTGGGCGATATCCTTGGCGCTCGCGGCAAGCTGTTCAAAACCAAGACCG GCGAGCTGTCTATCCACTGTACCGAACTGCGTCTGCTGACCAAGGCTCTGCGCCCGTTGCCGGACAAGTTCCACGGCCTG GCCGACCAGGAAACCCGCTACCGCCAGCGTTATCTGGACCTGATCGCCAACGATGAGTCGCGCAACACCTTCAAGGTGCG CTCTCAGGTGATGGCGGGGATCCGTAACTTCATGGTGGAACGCGGCTTCATGGAAGTCGAAACCCCAATGATGCAGGTGA TCCCTGGCGGCGCTTCTGCGCGTCCATTCGTGACTCACCACAATGCGCTGGACATCGATATGTACCTGCGTATTGCCCCG GAGCTGTACCTGAAGCGTCTGGTGGTTGGGGGCTTCGAGCGGGTGTTCGAAATCAACCGTAACTTCCGTAACGAAGGCGT TTCTCCGCGTCATAACCCAGAGTTCACCATGATGGAACTCTATATGGCTTACGCGGATTACAAAGACCTCATCGAGCTGA CAGAGTCGCTGTTCCGCACCCTGACTCAGGACGTGCTGGGCAAAACTCAGGTGCAGTACGGTGACGAAGTGTTCGATTTC GGCAAGCCGTTTGAAAAACTGACCATGACCGAGGCGATCAAAAAATACCGTCCTGAAACCGATCTGGCCGATCTGGCTGA CATGGGCAAGGCGGTGGCTATCGCTGAATCCATCGGTATCAAGATTGAGAAGAGCTGGGGTCTGGGCCGTGTAGTCACCG AGATCTTCGAAGAAGTGGCGGAAAGCCACCTGATTCAGCCGACCTTCATTACCGAATACCCGGCGGAAGTGTCCCCGCTG GCGCGCCGTAATGATGAGAACCCAGAAATCACTGACCGTTTCGAGTTCTTCATTGGCGGGCGTGAAATCGGTAACGGCTT CTCCGAGCTGAACGACGCGGAAGACCAGGCGCAGCGCTTTGCTGACCAAGTGAATGCGAAAGACGCAGGCGATGACGAAG CAATGTTCTACGACGAAGACTACGTCACCGCGCTGGAGCACGGCCTGCCGCCGACGGCTGGCTTGGGTATCGGTATCGAT CGCATGGTTATGCTGTTCACCAACAGCCACACCATCCGCGATGTGATTCTGTTCCCGGCAATGCGCCCGCAGAAATAA Protein sequence : MSEQQPQGADQALELNNELQSRREKLAGLRENGIAFPNDFRRDTTSDKLHAAYGDKDNEELEALGVEVTVAGRMMTRRIM GKASFVTLQDVGGRIQLYVARDDLAEGVYNEQFKKWDLGDILGARGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL ADQETRYRQRYLDLIANDESRNTFKVRSQVMAGIRNFMVERGFMEVETPMMQVIPGGASARPFVTHHNALDIDMYLRIAP ELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMELYMAYADYKDLIELTESLFRTLTQDVLGKTQVQYGDEVFDF GKPFEKLTMTEAIKKYRPETDLADLADMGKAVAIAESIGIKIEKSWGLGRVVTEIFEEVAESHLIQPTFITEYPAEVSPL ARRNDENPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFADQVNAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID RMVMLFTNSHTIRDVILFPAMRPQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-170 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_008160892.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-170 | 69 |
