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Name : M621_20495 (M621_20495) Accession : YP_008160861.1 Strain : Serratia plymuthica S13 Genome accession: NC_021659 Putative virulence/resistance : Virulence Product : fimbrial outer membrane usher protein SthC Function : - COG functional category : - COG ID : - EC number : - Position : 4320546 - 4323095 bp Length : 2550 bp Strand : - Note : Derived by automated computational analysis using gene prediction method: Protein Homology. DNA sequence : ATGAATAACCCGAATTGTATTGGTTTGCGAAGATCCAAATCGATCTTGGCATGTCTGTTTTCCTGCCAGGCGATACTGCT GAATTCACCGAGCGTGGCGCAAGCGCGTGATTACTTTAACCCAGCGTTGCTGGAAATAGATAACCCGGCGCTGCGCGGAG CGGATCTTTCAGTTTTCGAGGAAAATAGCACCCAGGCACCGGGAAGTTACCGGGTCGATCTTTATCTTAATGGCCAGCAG GTGGATTCCCTGGATGTCGAGTTCAGGCTCCAACAGGATGCGGCAGGGAAAAAAACGCTGCAGCCCTGCCTCAGCGCTGA AAAACTGACCGAGTTAGGTGTCAGGTTGAATTCACTTCCCGCGATCGCCGGCTCGGATGATTGCATCAACCTGGAGCAGG CCATTCCGCAGGCAAAGGCCACTTTTTTGTTCAACCAGTTGCGGCTGAATTTGAGCATTCCCCAGGCTGCTTTGAATTTG CACGCACGCGATTACGTATCCCCTGACAAGTGGGATGCCGGCGTACCGGCTCTGTTGGTCAACTATAGCTTCTCGGGTGC CAACAGCCAGGTGAGTGAAAGCAAAGGGCAGGGCAATGACAACTATTATCTCAACCTGCGCTCAGGAATTAACTGGGGTG CCTGGCGGCTGCGCAACTATTCGGTGTGGAATCAGCACAGCGGTGGCGCCTCTTCATGGCGTTCGATCAATACCTATTTG CAGCGCGATATCATTGCCTTGCAGAGCCGTTTGACCTTGGGTGATAGCACCACTTCTAGCGATGTTTTCGACAGCGTGCA GTTTCGTGGCGGTCAGTTGGCCTCGGAAGATGAAATTCTGCCGGATAGCATGAAAGGTTATTCACCGATAGTACGTGGGA TTGCGCGCAGCAATGCCCAGATTGTGATTCGACAGAATGGTTATGTGATCTACCAAAGCTATGTGGCGCCCGGTGCGTTC GAGATTACCGATCTTTACCCCACCGGCGGTAGTGGCGATCTGAATGTGAGCGTGCGGGAAGCCAATGGCCAGGAGCAAAA CTTTGTGGTGCCTTATGCCGTAGTGCCGGTTCTGCAGCGTGAGGGGCGGTTCAAATACAGCCTCACCAGTGGGACATATC GTTCTTACGGCAGTGAGGTCGATGAACGGCCTTTCAGTCAGGCTACCGGCATTTATGGGCTGCCTTGGGGCGCGACTTTA TACGGCGGCATACAGGCCGCGAGCAAGTATCAAGCCTTGGCTTTGGGCTGGGGGCAAAACCTGGGAGCTGTCGGGGCCTT GTCTGCCGACGTTACCCAGGCCTGGACCAAACAGGAAACCCAGCCCAAGGACCAGGGGCAATCATGGCGTTTACGCTACG GTAAAAACGTTATCGAAACCGGCACCAACTTCAGCCTGGCCAGTTATCGCTATTCCACTCGCGGCTTCTATACCCTGCAA GAGGCGTTGGAAAGTTATGGCGGTAACAGTGTCAAATATAACGACCACAAGAAAAGCCGCGCCGAATTGATATTGAGCCA GAACCTGTGGGAAGGGGGCGGAACGCTGTCACTCAGCCTGTTCAACGAGGATTACTGGAATGATAGCCGCCGTTCGCAAT CGGCCAGCGTCGGCTACAACAACAACTGGCAAAGCGTTAGCTACGGTTTCAATTACACCTTCAGCCAGAACGGTTTTGAC AGTAACGGCCAGCGTACCAACGTGCGCGATCACATCCTGGCCTTTAACGTCAGCGTCCCGTTGAATAAATGGCTGCCGGG CAGTTACGCCACCTACAACATGAACAGCAGCCGCAATGGCCCCACCAGCCATAACCTTGGGTTGAGTGGCAGCGCACTGG AAGGCAATAACCTGAACTACAGCCTCAGCCAGGGATATACCGGAAAAGGGGGAGGCGCCAATGGCAGCATTCAAGCCGAC TATAAAGGCTCCTTGGCTGAGCTGAACCTGGGCTATGGCTACGATCGCCATCGTCAGCAGGTGAACTACGGGATCCAGGG CGGTGTTTTGGTGCATCAAAACGGCATCACGCTGTCGCAGCCATTGGGCGACACGGTAGCGCTGGTACAGGCGCCGGGTG CCGCGGGTGTCAACGTACTGAATCAGACCGGTGTGAATACCGATTGGCGCGGTTATGCGGTAGTGCCCTATCTGACACCG TACCGCCGCAATATCGTTGGATTGGACGGTGATTCTTTTGCCGACGATGTGGATATGACCCTCAGCAGTCAAACGGTGAT CCCGACTCGCGGTGCCGTAGTGCGCGCCAGTTTTAGTCCCAATGTCGGTTTGCGCGTACTGATGACGTTGTTAACCAGGG CCGGAAGCCCGGTCCCGTTCGGCGCGACCGTCAGCGCTCTTAATGATCCGAAGGGCAATGCCAGTATTGTCGGTGACGGC GGACAAGTTTACCTGGCTGGGTTGGCTGAAAGCGGTCGGCTGCAGGTCAAGTGGGGAAATGGCGCTGCGCAACAGTGTCA GGTCAGCTATCAATTGGCTAACCAGCCTGAAAGCGGTGGGATTCGCTTGGTCAAGGGTCTGTGTTTATAA Protein sequence : MNNPNCIGLRRSKSILACLFSCQAILLNSPSVAQARDYFNPALLEIDNPALRGADLSVFEENSTQAPGSYRVDLYLNGQQ VDSLDVEFRLQQDAAGKKTLQPCLSAEKLTELGVRLNSLPAIAGSDDCINLEQAIPQAKATFLFNQLRLNLSIPQAALNL HARDYVSPDKWDAGVPALLVNYSFSGANSQVSESKGQGNDNYYLNLRSGINWGAWRLRNYSVWNQHSGGASSWRSINTYL QRDIIALQSRLTLGDSTTSSDVFDSVQFRGGQLASEDEILPDSMKGYSPIVRGIARSNAQIVIRQNGYVIYQSYVAPGAF EITDLYPTGGSGDLNVSVREANGQEQNFVVPYAVVPVLQREGRFKYSLTSGTYRSYGSEVDERPFSQATGIYGLPWGATL YGGIQAASKYQALALGWGQNLGAVGALSADVTQAWTKQETQPKDQGQSWRLRYGKNVIETGTNFSLASYRYSTRGFYTLQ EALESYGGNSVKYNDHKKSRAELILSQNLWEGGGTLSLSLFNEDYWNDSRRSQSASVGYNNNWQSVSYGFNYTFSQNGFD SNGQRTNVRDHILAFNVSVPLNKWLPGSYATYNMNSSRNGPTSHNLGLSGSALEGNNLNYSLSQGYTGKGGGANGSIQAD YKGSLAELNLGYGYDRHRQQVNYGIQGGVLVHQNGITLSQPLGDTVALVQAPGAAGVNVLNQTGVNTDWRGYAVVPYLTP YRRNIVGLDGDSFADDVDMTLSSQTVIPTRGAVVRASFSPNVGLRVLMTLLTRAGSPVPFGATVSALNDPKGNASIVGDG GQVYLAGLAESGRLQVKWGNGAAQQCQVSYQLANQPESGGIRLVKGLCL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 8e-151 | 43 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 2e-150 | 43 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 5e-141 | 41 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 5e-139 | 41 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 5e-139 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| M621_20495 | YP_008160861.1 | fimbrial outer membrane usher protein SthC | VFG0446 | Protein | 7e-151 | 45 |
| M621_20495 | YP_008160861.1 | fimbrial outer membrane usher protein SthC | VFG0454 | Protein | 6e-178 | 45 |
| M621_20495 | YP_008160861.1 | fimbrial outer membrane usher protein SthC | VFG1645 | Protein | 1e-150 | 43 |
| M621_20495 | YP_008160861.1 | fimbrial outer membrane usher protein SthC | VFG0912 | Protein | 7e-151 | 42 |
| M621_20495 | YP_008160861.1 | fimbrial outer membrane usher protein SthC | VFG0876 | Protein | 7e-155 | 41 |
