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Name : smpB (M621_19560) Accession : YP_008160682.1 Strain : Serratia plymuthica S13 Genome accession: NC_021659 Putative virulence/resistance : Unknown Product : single-stranded DNA-binding protein Function : - COG functional category : - COG ID : - EC number : - Position : 4128364 - 4128846 bp Length : 483 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGACAAAGAAAAAAGCACACAAACCCGGTTCAGCCACCATTGCGCAGAACAAGCGAGCGCGTTTCGAATACTTCATTGA AGAAGAGTTCGAGGCGGGCCTGTCGCTGCAAGGGTGGGAAGTAAAATCGCTGCGTGCCGGCAAAGCCAACATTAGCGACA GCTACGTGACCTTCCGCGATGGTGAAGCCTATCTGTTTGGGGCCACCGTCTCACCGCTCAACGTAGCCTCGTCGCATGTA GTATGCGATCCGACACGTACCCGTAAATTGCTGCTGAAAAAACGTGAGCTGGACTCACTGCTCGGCCGCGTAAACCGCGA CGGCTACACCGTGGTTGCCTTGTCCATGTATTGGAAAAATGCCTGGGCCAAGATCAAAATCGGCGTAGCCAAAGGCAAGA AAGAACACGATAAACGCGATGACATCAAAGATCGTGAATGGCAGACGGCGAAATCCCGTATCATGAAGCATGCCAACCGA TAA Protein sequence : MTKKKAHKPGSATIAQNKRARFEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVTFRDGEAYLFGATVSPLNVASSHV VCDPTRTRKLLLKKRELDSLLGRVNRDGYTVVALSMYWKNAWAKIKIGVAKGKKEHDKRDDIKDREWQTAKSRIMKHANR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 5e-38 | 67 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 9e-11 | 43 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-12 | 42 |
