Gene Information

Name : M621_07680 (M621_07680)
Accession : YP_008158355.1
Strain : Serratia plymuthica S13
Genome accession: NC_021659
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1596567 - 1597238 bp
Length : 672 bp
Strand : +
Note : transcriptional activator of tricarboxylate transport system genes; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGCGGATATTGGTGATTGAAGACGACATCAGCACGGGTGATTACCTGAAAAAAGGGCTGGGAGAGGCGGGATACAGCGT
CGATCTGGCGCGTAACGGCACTGACGGGCTGTTCCGGGCGCTGGAGCACGGTTACGACGCCATCGTGCTCGACGTGATGC
TGCCGGGGCTGGACGGCTGGCAGATAGTGGAAGTGCTGCGCAAGAAAAGCGATGTGCCGATCCTGTTTCTGACTGCGCGT
GACGGGGTGCAGGATCGCATTCATGGCCTGGAGCTGGGGGCCGAAGATTATTTGATCAAACCCTTTTCCTTCACTGAACT
GGTGTTGCGTATCCGTACGCTGCTGCGGCGCGGCACGGTGCGTGAAGCCGATCACTACAGCCTTGCCGATCTGCAACTCG
ACGTATTGCGCCGCAAGGCGGTGCGGCAGGATGTGGTGATCCCGCTGACCAATAAGGAGTTTATGCTGTTGCACCTGTTG
GTGCGGCGCGAAGGAGAGGTGCTGTCGCGCACCCTGATCGCCTCGCAGGTTTGGGACATGAATTTTGACAGCGACACCAA
CGTGGTGGATGTGGCGATCAAACGCCTGCGCGCCAAGATTGACCGGCCGTTCGCTATCAAGCTGATTCATACCGTGCGCG
GCATCGGTTATGTCTGCGAGCCGCGCTCATGA

Protein sequence : 
MRILVIEDDISTGDYLKKGLGEAGYSVDLARNGTDGLFRALEHGYDAIVLDVMLPGLDGWQIVEVLRKKSDVPILFLTAR
DGVQDRIHGLELGAEDYLIKPFSFTELVLRIRTLLRRGTVREADHYSLADLQLDVLRRKAVRQDVVIPLTNKEFMLLHLL
VRREGEVLSRTLIASQVWDMNFDSDTNVVDVAIKRLRAKIDRPFAIKLIHTVRGIGYVCEPRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-54 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-53 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M621_07680 YP_008158355.1 transcriptional regulator BAC0125 Protein 6e-66 62
M621_07680 YP_008158355.1 transcriptional regulator BAC0197 Protein 9e-66 62
M621_07680 YP_008158355.1 transcriptional regulator BAC0308 Protein 6e-61 60
M621_07680 YP_008158355.1 transcriptional regulator BAC0638 Protein 1e-56 60
M621_07680 YP_008158355.1 transcriptional regulator BAC0083 Protein 2e-62 59
M621_07680 YP_008158355.1 transcriptional regulator BAC0111 Protein 2e-60 57
M621_07680 YP_008158355.1 transcriptional regulator BAC0347 Protein 1e-52 52
M621_07680 YP_008158355.1 transcriptional regulator AE000516.2.gene3505. Protein 2e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M621_07680 YP_008158355.1 transcriptional regulator VFG0596 Protein 1e-54 54
M621_07680 YP_008158355.1 transcriptional regulator VFG1390 Protein 3e-38 44
M621_07680 YP_008158355.1 transcriptional regulator VFG1389 Protein 1e-34 43
M621_07680 YP_008158355.1 transcriptional regulator VFG1386 Protein 2e-33 42