|
Name : M621_05230 (M621_05230) Accession : YP_008157879.1 Strain : Serratia plymuthica S13 Genome accession: NC_021659 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : - COG ID : - EC number : - Position : 1113813 - 1115780 bp Length : 1968 bp Strand : + Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+. DNA sequence : GTGATTACGCATCTTTTTTACCATTTTGGCCATCAACTGGCCCGCCTTCCCTGGCGGGAACTGGTGGTGGTATCAATGTT GGCGGTTACCCCCGGGATAACGCATGCAGCGTCATTCTCTGCCAATTTCAAAGGTACGGATATTCAGGAATTTATCAACA CGGTCAGTAAAAACCTGGGCAAAACGATCATTATTGATCCGGCGGTGAAAGGAAAAGTCACCGTACGTAGCTATGAGCAG CTTAACGATAAACAATATTATCAATTCTTCCTGAACGTGCTGGACGTGTACGGATATACCGTCATTGGTATGCCAAATAA CGTGCTTAAAGTCATTGTGGCGAAAGACGGGAAAAGAGCCGCTTTGTCGCAGGCCGGCGGTGAGCTGATTGGGGAAGGGG ATGAGGTTGTAATGCGTATTGTTCCTTTGCGCAATATCGCGGCCAAGGATATTTCCCCATTATTACGTCAACTGAATGAC AGCGTGGGCGTAGGCAGCGTGGCGCACTATGAACAGGGCAACGCGTTGTTGATAACCGGCAGAGCCGCGGTAGTGAATGG GTTGATCGATATTGTTCGGGAGATGGATCAGGACGACAGCAATCAGATAGAAACGCTTGCGCTGAAGCATGCGGCGGCGG CCGAGATTGTGCGTATGGTCAATGCGCTGTTCCGCGAAGAGGGCAAGCAGCGGATGGCGGGTGCTGCGACGCTGCGGCTG GTCGCGGATGAAAGAACCAATACTGTGATGATTACCGGCGACGATCGGATCCGCGAATATGTTAAGGACATGATTTATCA GCTGGATAACAAGAGCGTCAATCAAGGCAATACCCAAGTCATTCAACTGAAATACGCCAAGGCGCAGAGCCTGGTCGAGG TGCTGACGGGGATTAGCTCAGGCCTGCAAAATGAAAAAGAGGGCGCGGCAACCAATGTAGCCTTGTTGAAAAATGTGGTG ATCAAAGCCGATGAGCAAACCAATGCGTTGATCATCACCGCTGCGCCGGATGTGATGCGCGACCTGGAAGAGGTGGTGGC CAAGCTGGATGTCCGCCGTGCTCAGGTGCTGGTTGAGGCGGTGATTGTCGAAGTGCAGGATGGCCAGGGGCTGAATATCG GCGTCCAGTGGGCCAATAAATACGGCGGTGGCACGCAGTTTGGCGGCAATGTACCTGGCGTTTCAACGGGTTTTGACGGT GGCATGCTCGAGGCTTTCAACAAGGCCAGTGGTTTGATGACCGGCTTTTACAGCGGAAACTGGGGGGTATTGCTATCCGC CATCGCCAGCAATAATCAAAATAATATTCTGGCTACGCCGAGCATTGTCACCCTGGATAACGCCGAAGCGGAATTCAGCG TAGGCCAGGATGTGCCTATTTTGACCGGTTCGCAAACCACCAACAGCGATAACGTTTTCAATACCGTCTCGCGTAAAACC GTGGGGATAAAACTCAAGGTCAAACCGCAGATTAACAAGGGCCAATCGGTCCTGATGCAGATTGAGCAGGAAGTCTCCAG CGTTGCCGACAATACGCAGGTCTCCGCCGATTCCCTGGGCGCCACTTTTAATATCCGTACGGTAAATAACACCGTGTTGG TCGACAGCGGCGAAACGGTAGTGGTTGGCGGTCTGCTGGATAAAACCAATTCAGAGGTGGAAAGCAGCGTTCCGCTGTTG GGGAAAATTCCGGTATTGGGCGCGCTGTTTCGTTCTACGTCGGTGAAAGAGAGCAAGCGCAATTTAATGCTGTTCATCCG CCCGACCATCATCCGGACGACCGAAGGATTCTCTCAGCAGAGCCAACGTAAAGTCGGCAAATTTGATGTTGAGCAGCGGG AAGATATCGAGCTGAAAACGGCGTTGCGCGAGGAAATCTCCTCTGGCCAAACCGCGGGTGACAATCAAGCGTTTCTCCGC GTCATTTCGCAGGTCAATGCGTTCTATGGCCAAGAGGGAAAACCATGA Protein sequence : MITHLFYHFGHQLARLPWRELVVVSMLAVTPGITHAASFSANFKGTDIQEFINTVSKNLGKTIIIDPAVKGKVTVRSYEQ LNDKQYYQFFLNVLDVYGYTVIGMPNNVLKVIVAKDGKRAALSQAGGELIGEGDEVVMRIVPLRNIAAKDISPLLRQLND SVGVGSVAHYEQGNALLITGRAAVVNGLIDIVREMDQDDSNQIETLALKHAAAAEIVRMVNALFREEGKQRMAGAATLRL VADERTNTVMITGDDRIREYVKDMIYQLDNKSVNQGNTQVIQLKYAKAQSLVEVLTGISSGLQNEKEGAATNVALLKNVV IKADEQTNALIITAAPDVMRDLEEVVAKLDVRRAQVLVEAVIVEVQDGQGLNIGVQWANKYGGGTQFGGNVPGVSTGFDG GMLEAFNKASGLMTGFYSGNWGVLLSAIASNNQNNILATPSIVTLDNAEAEFSVGQDVPILTGSQTTNSDNVFNTVSRKT VGIKLKVKPQINKGQSVLMQIEQEVSSVADNTQVSADSLGATFNIRTVNNTVLVDSGETVVVGGLLDKTNSEVESSVPLL GKIPVLGALFRSTSVKESKRNLMLFIRPTIIRTTEGFSQQSQRKVGKFDVEQREDIELKTALREEISSGQTAGDNQAFLR VISQVNAFYGQEGKP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 2e-117 | 44 |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-108 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| M621_05230 | YP_008157879.1 | general secretion pathway protein D | VFG2047 | Protein | 5e-105 | 43 |
