Gene Information

Name : SCE1572_43370 (SCE1572_43370)
Accession : YP_008155025.1
Strain : Sorangium cellulosum So0157-2
Genome accession: NC_021658
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 12200759 - 12202297 bp
Length : 1539 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGTTGCGCGCGCGGGCGCGAGCGGCGCCGACGCGCCTGGCCGTCGTCGACGGAGCGCGTCGCTGGACGTACCAGGAGCT
CGACGAGCGCGCGGATCGCATGGCCGCCGGGCTCCGCCGGCTCGGCATCGCGAAGGAGCAGCGAGTTCTCGTGCAGCTGC
CCAACATCGCCGAATTCCTGCCGCTGTGCTTTGCGCTGTTCCGGATCGGCGCCATCCCGGTGCTGGCATTGCCGGCGCAC
CGAGAGACGGAGATCGTGCATCTGGCGGAGCTCTCGCAGTCGGTCGCCTATGTGATCGCCGACGTCCACGTTGGTTTCGA
CCACCGGGCGCTCGCCCGCGCGGTCTGCAAGAAGGTGGCGAGCCTCCGGCACGTCCTCGTGGTGGGCGACGCGCAGGAAT
TCGTGTCGTTGTCGGAGGTGGACGCGCCGGCGGAGGACATGGACGGGCCGGCGCCGCGCGATGTAGCCCTGCTCTTGCTG
TCGGGCGGAACGACCGGGGCTCCCAAGCTGATCCCGCGCACGCACGACGACTATGTCTGCAACGTCCGCCTCAGCGCCGA
GGTGACGGGCCTGAATGAGAGCACTCGCTACCTGGTGAGCCTCCCCATCGCCCACAACTTTGCGCTGGGGTGCCCTGGAG
CCCTGGGCACCTTGCACGCTGGCGGCACCGTCGTGTTCTGCAAGGACCCCAGCCCTGAGACCGCGTTTCGGCTGATCGAG
AAGGAGAAGATCACCGTGACCGCGCTCATCCCGCCGCTCGTCGTGCTGTGGCTGGAGGCGGCGGAGTGGGTGCAGGCGGA
TCTGAGCAGCTTGCAGTGGCTCCAGGCAGGAGGTGCTCGCCTCAAGGCCGAGACGGCGGCGCGCGTGCGGCCCGTCCTCG
GCTGCGGGTTGCAGCAGGTCTACGGCATGGCAGAAGGGCTGCTCAACTTCACGCGGCTCGACGACCCCGAATCCATGGTC
ATCAACACGCAAGGCCGGCCGGTCGCCGCGGACGACGAGGTGAGGATCGTCGACGCCTCGGACGTCGAGGTGGCGGACGG
CGAGATCGGTGAGCTGCAGGTCCGCGGCCCCTACACCATACGCGGGTATTATCGTGCGGATGACTACAATCGTCGCGCCT
TCACCGCCGACGGCTTCTACCGGAGCGGGGACCTGGTGCGGCGACTGCCCAGCGGGCATCTGGTGGTGGAAGGCCGGAGC
AAGGACGTGATCAACCGGGGAGGGGAGAAGGTCCCGGTCGAGGAGATCGAGAACTATCTCATGGCACACCCGGCGGTCCG
TGACGTCGCCATCGTCGGCATCCCGGACCCCACCATGGGGGAGCGCACCTGTGCATGCATCATCCCGCGCGGTAAAGCGC
CCGCGCTGGCCGAAGTGAACGCCTACCTCAGCCGTCTGGGCGTGGCTGCATTCAAGCTGCCGGATCGTTTGGTGGTCCTG
GAGAGCTTCCCGCAGACGAGCGTGGGCAAGGTCAACAAGCGGGCCTTGGCGAAGCAGGTATGCGGCGCCCCTCCAGCCAT
GATCACGGAGGTCTCATGA

Protein sequence : 
MLRARARAAPTRLAVVDGARRWTYQELDERADRMAAGLRRLGIAKEQRVLVQLPNIAEFLPLCFALFRIGAIPVLALPAH
RETEIVHLAELSQSVAYVIADVHVGFDHRALARAVCKKVASLRHVLVVGDAQEFVSLSEVDAPAEDMDGPAPRDVALLLL
SGGTTGAPKLIPRTHDDYVCNVRLSAEVTGLNESTRYLVSLPIAHNFALGCPGALGTLHAGGTVVFCKDPSPETAFRLIE
KEKITVTALIPPLVVLWLEAAEWVQADLSSLQWLQAGGARLKAETAARVRPVLGCGLQQVYGMAEGLLNFTRLDDPESMV
INTQGRPVAADDEVRIVDASDVEVADGEIGELQVRGPYTIRGYYRADDYNRRAFTADGFYRSGDLVRRLPSGHLVVEGRS
KDVINRGGEKVPVEEIENYLMAHPAVRDVAIVGIPDPTMGERTCACIIPRGKAPALAEVNAYLSRLGVAAFKLPDRLVVL
ESFPQTSVGKVNKRALAKQVCGAPPAMITEVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
irp5 CAA73130.1 Irp5 protein Virulence HPI Protein 3e-107 49
irp5 YP_002346898.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 5e-107 49
ybtE NP_669710.1 salicyl-AMP ligase Virulence HPI Protein 5e-107 49
ybtE NP_993003.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 5e-107 49
ybtE YP_070120.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 5e-107 49
ybtE CAA21394.1 - Virulence HPI Protein 5e-107 49
irp5 YP_001006819.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 5e-107 49
ybtE YP_853079.1 yersiniabactin siderophore biosynthetic protein Virulence PAI IV APEC-O1 Protein 4e-107 49
ybtE AAA93464.1 yersiniabactin 2,3-dihydoxybenzoate-AMP ligase Virulence HPI Protein 4e-107 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCE1572_43370 YP_008155025.1 hypothetical protein VFG0168 Protein 4e-118 53
SCE1572_43370 YP_008155025.1 hypothetical protein VFG1817 Protein 3e-108 51
SCE1572_43370 YP_008155025.1 hypothetical protein VFG0932 Protein 2e-96 47