Gene Information

Name : SCE1572_42130 (SCE1572_42130)
Accession : YP_008154785.1
Strain : Sorangium cellulosum So0157-2
Genome accession: NC_021658
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 11875329 - 11876126 bp
Length : 798 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGCTGCCCCAGAGCCAGGCCGTCGCCGCGGTGCTCCGAGACGAGCCGCTCATCGAGCTCTCGAGCGTCGGCAAGGACTA
CACGACCGAGGCGGTCGTCGTGCGGGCGCTCCGTCACGTCGATCTGACCATCCAGCACGGCGACTTCGTCGCCATCGTCG
GGCAGAGCGGCTCGGGCAAGAGCACCCTGATGAACATCATCGGGTGCCTCGATCGGCCGACCCGGGGCACGTACCGGCTG
GACGGGCTCGACGTGACCCGGCGCAGCAACGACGCGCGCGCGATCGTGAGGAACCGCCTCATCGGGTTCGTCTTCCAGGG
CTTCAACCTGCTGCCGCGCACCACGGCGCTCGAGAACGTGGAGCTGCCGCTCGTCTACCGGGGCGTCGGCGCGGCGGAGC
GGCGCAGGCGCGCGCTGGAGGCGCTCAGCGCGGTGGGGCTGGCCGAGCGCCTGCACCACACGCCGAACCAGCTCTCGGGC
GGCCAGCAGCAGCGCGTCGCCATCGCGCGGGCGCTCGTCACCTCCCCGCCGCTGCTCCTCGCCGACGAGCCCACGGGCAA
CCTCGACACCCGCACGAGCTACGAGGTGCTCGGGCTCCTGCAGCGGCTCAACCTGGAAGGGATCACCATCGTCCTCGTGA
CCCACGAGCCGGACATCGCCGCCTGCGCGAGCCGCGTGATCACGATGCGCGACGGCGAGGTCCGCAGCGATCTCAGGAAC
GAGCGCCCCGTCGACGCGGCGGTGGCCCTGGCCGCGCTGCCGCCCTCCGGGGCGGAGCTCGACGAGCAGGCGCCGTGA

Protein sequence : 
MLPQSQAVAAVLRDEPLIELSSVGKDYTTEAVVVRALRHVDLTIQHGDFVAIVGQSGSGKSTLMNIIGCLDRPTRGTYRL
DGLDVTRRSNDARAIVRNRLIGFVFQGFNLLPRTTALENVELPLVYRGVGAAERRRRALEALSAVGLAERLHHTPNQLSG
GQQQRVAIARALVTSPPLLLADEPTGNLDTRTSYEVLGLLQRLNLEGITIVLVTHEPDIAACASRVITMRDGEVRSDLRN
ERPVDAAVALAALPPSGAELDEQAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-27 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-28 44
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCE1572_42130 YP_008154785.1 ABC transporter NC_012469.1.7686878. Protein 1e-48 55
SCE1572_42130 YP_008154785.1 ABC transporter NC_008702.1.4606598. Protein 1e-42 54
SCE1572_42130 YP_008154785.1 ABC transporter CP001581.1.gene798.p Protein 2e-36 48
SCE1572_42130 YP_008154785.1 ABC transporter CP001581.1.gene598.p Protein 3e-36 43
SCE1572_42130 YP_008154785.1 ABC transporter NC_012469.1.7685735. Protein 5e-31 41