Gene Information

Name : SCE1572_39935 (SCE1572_39935)
Accession : YP_008154351.1
Strain : Sorangium cellulosum So0157-2
Genome accession: NC_021658
Putative virulence/resistance : Unknown
Product : recombinase XerD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 11256254 - 11257204 bp
Length : 951 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGACCCTCATCGAAGCCGTGCGCGCCACCATCCGGCGCCTGCATTACTCGCCGCGTACCGAAGAGGCGTATGTCCACTG
GATTCGAGCATTTATTCGCTTTCATCACGGCAAGCATCCACGGCAGATGGGCGCGGAAGAGGTCACGGCCTTCCTCAACG
ATCTTGCGGTCGCGCGCCGCAGCGCGGCGTCCACGCAGAACCAAGCGCTGTGCGCGCTCCTCTTCCTTTACAAACGGGTC
CTCGACCTGCAGATACCCCGGCTCGAAGCGCTCGAGCGTGCCCGCCGGCCGGAGCACCTCCCCACGGTCCTCTCGCGACA
GGACGCTCTCACCTTGCTCGAGCACCTGATCCCACCTTTTCGGCTCATCGGCGAGCTCCTCTACGGAAGCGGCCTCCGCC
TCCTCGAAGCGCTTTCGATTCGCGTCAAAGACGTCGACCTTGATCGACGGCAAATCATGGTGCGCCGCGGGAAAGGACAG
CACGATCGGCCGGCCTTGCTCCCCGCTCGGGCGCGCGACGAGCTGCAGGCCCAGCTCGACGCCGTGGCGCAACGGCACAA
GAAGGAACTCGCGGCTGGCCGCGGCGAGGTCGACCTGCCCCACGCTCTGCGAGCGAAGATGCCAGGAGCAGCCACGAGCC
TCCCCTGGCAGTACCTCTTCCCCGCCTCTCGCCCTTGCACCGATCCAGCGACGGGTCGACAGGTCCTCTACCACCTGCAC
GAATCGGCGGTGCAAAGGGCCGTGAACAATGCCGGACGGGCGTCGGGGCTCACCAAGCGCGCGACATGCCATACCCTCCG
CCACAGCTTCGCGACCCACCTGCTCGAGGCGGGCACCGACATCCGGACGATCCAGACATTGCTCGGCCACAAGGATGTGC
GGACCACGATGATCTACACCCACATCGTCGACCGCGGCCCTCTCGGCGTGATCAGCCCTCTCGACCGCTGA

Protein sequence : 
MTLIEAVRATIRRLHYSPRTEEAYVHWIRAFIRFHHGKHPRQMGAEEVTAFLNDLAVARRSAASTQNQALCALLFLYKRV
LDLQIPRLEALERARRPEHLPTVLSRQDALTLLEHLIPPFRLIGELLYGSGLRLLEALSIRVKDVDLDRRQIMVRRGKGQ
HDRPALLPARARDELQAQLDAVAQRHKKELAAGRGEVDLPHALRAKMPGAATSLPWQYLFPASRPCTDPATGRQVLYHLH
ESAVQRAVNNAGRASGLTKRATCHTLRHSFATHLLEAGTDIRTIQTLLGHKDVRTTMIYTHIVDRGPLGVISPLDR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 3e-62 48
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 3e-62 48
intI1 AAK02045.1 integrase Not tested SGI1 Protein 5e-62 48
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 1e-62 48
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 3e-62 48
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 5e-62 48
intI YP_001844881.1 integrase Not tested AbaR20 Protein 5e-62 48
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 1e-62 48
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 3e-62 48
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 5e-62 48
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 5e-62 48
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 3e-62 48
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 5e-62 48
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 5e-62 48
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 3e-62 48
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 5e-62 48
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 5e-62 48
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 3e-62 48
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 5e-62 48
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 1e-62 48
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 3e-62 48
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 5e-62 48
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 3e-62 48
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 5e-62 48
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 1e-61 48
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 3e-43 47
int1 YP_005160012.1 integrase Not tested Not named Protein 2e-47 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCE1572_39935 YP_008154351.1 recombinase XerD VFG1028 Protein 6e-62 48