Gene Information

Name : SCE1572_22620 (SCE1572_22620)
Accession : YP_008150932.1
Strain : Sorangium cellulosum So0157-2
Genome accession: NC_021658
Putative virulence/resistance : Virulence
Product : Vi polysaccharide biosynthesis protein vipB/tviC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6381659 - 6382705 bp
Length : 1047 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGTCCACGCCTCGCTACTTGGTCACCGGCGGTGCCGGGTTCATCGGAAGCAACCTCGTCGCGGCGCTGACCGCGGCCGG
GGAGCGGGTCCGCGTCCTCGATAACCTCGCGACGGGCCGGTGGGAGAACCTCGACGGGCTCCCGCACCAGTCGTCGATCG
AGCGCATCACCGGGGACATCCGGGACGCGGCGGCGGTCGCGGCGGCGGCGAAGGGGGTCGAGGTCATCCTCCACCAGGCC
GCGCTCGGCTCGGTCCCGCGCAGCGTCGAGACGCCGGTCGAGTCGAACGCCGTCAACGTCGGCGGCACGGTCACGGTGCT
CGACGTGGCGCGCCGGCAGGGCGTGCGCCGCGTGATCTTCGCCGCGTCCTCCAGCGCGTACGGCGAGACGCCCGTCCTCC
CGAAGCACGAGGCCATGGAGCCGATGCCGCTCTCGCCCTACGCCGTCACGAAGCTCGCCTGCGAGCATTACATGAAGGTC
TTCGCGGGCATCTACGGCATCGAGACCCTGAGCCTTCGCTACTTCAACGTCTTCGGGCCGAACCAGACGCCGGACGGCGC
CTACGCCGCGGCGATCCCGCGGTTCATCGACGCCGCCCTGCAGAACCGGTCGATCCCGATCTACGGCGACGGGGAGCAGA
CGCGCGACTTCTGCTTCATCGAGAACACCGTCCTCGCGAACCTGCTCGGCGCCACGTCGCCGAAGAAGTTCAAGGGCGAG
ATCATCAACATCGCCGGCGGCCGCAGGATCGGGCTGAACGAGCTCTGCAGGGAGATCTCGCGGGTCCTCGGGCGCGACGT
CGCGATCGAGCACCTCCCGCCCCGCGCGGGGGACATCCGCCACTCGCTCGCCGACATCTCGCGCGCGGCCGAGCTCATCG
GGTACGAGCCCCGCGTGCGCTGGGAGGACGGCATCGCCCCCACGGTCACGTACCTGCGGACGCTCCGCGAGAAGGGCCCC
GCGGCCGCGTCGGCCACGGTCACCTGTGGCAAGGTTCCGCTGCCCAAGGCCCAAGCGGCCACGGACACCGGGCACCAGGC
GAGCTAG

Protein sequence : 
MSTPRYLVTGGAGFIGSNLVAALTAAGERVRVLDNLATGRWENLDGLPHQSSIERITGDIRDAAAVAAAAKGVEVILHQA
ALGSVPRSVETPVESNAVNVGGTVTVLDVARRQGVRRVIFAASSSAYGETPVLPKHEAMEPMPLSPYAVTKLACEHYMKV
FAGIYGIETLSLRYFNVFGPNQTPDGAYAAAIPRFIDAALQNRSIPIYGDGEQTRDFCFIENTVLANLLGATSPKKFKGE
IINIAGGRRIGLNELCREISRVLGRDVAIEHLPPRAGDIRHSLADISRAAELIGYEPRVRWEDGIAPTVTYLRTLREKGP
AAASATVTCGKVPLPKAQAATDTGHQAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 5e-48 45
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 5e-48 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCE1572_22620 YP_008150932.1 Vi polysaccharide biosynthesis protein vipB/tviC VFG0430 Protein 2e-48 45