Gene Information

Name : SCE1572_06800 (SCE1572_06800)
Accession : YP_008147815.1
Strain : Sorangium cellulosum So0157-2
Genome accession: NC_021658
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1943048 - 1943923 bp
Length : 876 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
GTGAGGTTCGAGTTCATCGACGCGGAGAAGGCGCACTACCCGGTGCTGGTGCTGTGCGCGGTGCTGCTGGTCTCGCGCAG
CGGCTACTACGGGTGGGCCATGCGCTCGGAGTCCGCGCGGGCCAAGTCCGACGCTCAACTGAGCGCGCAGATCAGGGCCG
TGCACCACAAGAGCCGTGGCCGCTACGGCAGTCCGCGTATTCACGCGGAGCTGCGCGCTCGCGGCATGCGTGTCGGCAAG
AAACGGGTCGAGCGGCTGATGCGCGCTCAGAGGCTCGCGGCTCGGAGGAAGCGGCGCTTCCGCCGCACCACCGACTCGCG
GCACAACGGCCCGATCGCCCCGAACGTGATCGAGCGGCAATTCGATGCTCGAGCGCCCAACCAGGTCTGGGTGACGGACG
TGACGTACATCCCCACCGGCGAGGGCTGGCTGTACCTGGCCGTGATCCTGGACCTGTTCTCGCGACGCGTGGTCGGCTGG
GCCGCGAGCGCGTTCAACGATCGCGCCCTGGCGCTCACCGCGCTCGCGTTCGCCTTGGGAACGCGACGGCCGGCGCCTGG
GCTGGTGCACCACTCGAACCGCGGCAGCCCCTACGCCAGCGACGACTACCGGCTCGTGCTCGGGGCCCACGGGCTCATCC
CGAGCATGAGCCGCGCTGGCGACTGCTGGGACAACGCCGTGGCCGAGAGCTTCTTCGCGACGCTGAAGGCGGAGCTGGTC
GAGTACGAGCGCTACCCGACGCGAGCGGCCGCCACCGCCTCGGTCAGAGACTACATCGACAACTTCTACAACCTGAAACG
CCGGCACCCACGGCTCGCCTACATGAGCCCGATCGAGTTCGAATTGAAGACCTACGTGGCCGCGCGCGCGGCATAG

Protein sequence :
MRFEFIDAEKAHYPVLVLCAVLLVSRSGYYGWAMRSESARAKSDAQLSAQIRAVHHKSRGRYGSPRIHAELRARGMRVGK
KRVERLMRAQRLAARRKRRFRRTTDSRHNGPIAPNVIERQFDARAPNQVWVTDVTYIPTGEGWLYLAVILDLFSRRVVGW
AASAFNDRALALTALAFALGTRRPAPGLVHHSNRGSPYASDDYRLVLGAHGLIPSMSRAGDCWDNAVAESFFATLKAELV
EYERYPTRAAATASVRDYIDNFYNLKRRHPRLAYMSPIEFELKTYVAARAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 7e-49 47
unnamed AAF09022.1 unknown Not tested SHI-O Protein 5e-49 47
unnamed AAF09030.1 unknown Not tested SHI-O Protein 9e-49 47
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 1e-48 47
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 9e-49 47
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 9e-49 47
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 9e-49 47
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 9e-49 47
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-46 46
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-46 46
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-46 46
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 8e-49 46
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 2e-37 45
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-37 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCE1572_06800 YP_008147815.1 transposase VFG1706 Protein 4e-49 47