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Name : hofB (SOD_c06430) Accession : YP_008136856.1 Strain : Serratia odorifera 4Rx13 Genome accession: NC_021591 Putative virulence/resistance : Virulence Product : protein transport protein HofB Function : - COG functional category : - COG ID : - EC number : - Position : 711480 - 712928 bp Length : 1449 bp Strand : - Note : - DNA sequence : ATGAGCATAGGCATCAGCGATGAAATTCACGCCCTGTGCCAGCGCTACCAGGCGCTGGCACTCAGCGAAGACGACGACAG CCTGACCGTTGCCCTGAACGCTGAAGTACCGCAGGAGCTGCTGCCGGCCCTGCGTTTCGCCACCGGCAAACGTATTCATC TGGAGCAGTGGCCTGCGGCCCGACTGGAACTGGAACTGAACCGCCGGCAAATGCAGGGTGACAGGCTTGGACAAAGCGCG CCGGAAGCCGAGCCGGACGCCTCCTCATTAAATGACGACAGCGACGCACCCGTGGTGCAGTTTATCAACCAAACGCTGCG CATCGCCATACAACGACGCGCGTCGGACATTCATTTCGAACCTTATCTGCAGACACTGCGTATCCGGCTGCGCATCGACG GCGTGTTGCAGGCCGTAGCTTCACCGCCTTTCCCCCTGGCCGCACGTCTTATCGCCCGACTGAAGATCATGGGGCAGTTG GATATCGCCGAGCGCCGTCTGCCGCAGGATGGGCAGCTCAGCGTACAACTGGATAACGCCAGTTATTCAATGCGCATCGC TACCTTACCGACACTGCACGGTGAAAAAGTGGTGCTGAGGATCCTGCAAACCGAACGCCAGGAGCTGCCGTTGGATCGGT TAGGCATGAGCCAAACGGCGCTGGCGCAGTATGCTGAGGCACTGTCCTGCCCCCAGGGCATGATCCTGGTCACAGGCCCG ACCGGCAGCGGTAAAACCGTCACGCTGTACAGCGGCCTGCGACAATTGAATGACGCGCAAAGCAATTTGTGCAGCGTCGA GGACCCGATTGAAATTCCTCTGTTCGGCGTCAACCAGACCCAGATAAACCCCAAAACCGAGCTGGATTTCTCTCGCGTGT TGCGCGCCTTGTTGCGCCAGGATCCGGACGTCATCATGATCGGTGAGATCCGCGACCGGGAAACGGCGGAAATCGCAGTG AAAGCGGCTCAAACCGGTCATCTGGTCCTCTCGACGCTGCACACCAACTCCACCAGCGAAACCCTGACGCGTCTGACCCA TATGGGTATTCCGGGTTATCTGATCGCCGCCTGTCTGAAGCTGGTCATCGCCCAGCGGCTGGTGCGCAAGCTGTGCAGTC ACTGTCGCTATCAACAGAACCTGCCCGTTCACTTTCCCACCGCCATTTGGGCCACCCCTCTGTTGCCCTGGCAGGCTGAC GGCTGCGAACACTGCTTTAGCGGTTATTACGGCCGCACAGGGGTTTATGAGCTGCTGATGATCACTCCAGAGGTGCAAGC CGGTCTGCTGCAAGGCGCAGCCCCCGGCCAGTTGGCCGATATCGCCCGACAACAAGGACAGATAACGCTGCTGCAAGCCG GACTAACGCTGGTTTCTCAAGGCCTCACCTCGTTGGAAGAGGTATATCGCATTGTCGGTATCACCGCCGAAAGCGGAGCG ACGCCGTGA Protein sequence : MSIGISDEIHALCQRYQALALSEDDDSLTVALNAEVPQELLPALRFATGKRIHLEQWPAARLELELNRRQMQGDRLGQSA PEAEPDASSLNDDSDAPVVQFINQTLRIAIQRRASDIHFEPYLQTLRIRLRIDGVLQAVASPPFPLAARLIARLKIMGQL DIAERRLPQDGQLSVQLDNASYSMRIATLPTLHGEKVVLRILQTERQELPLDRLGMSQTALAQYAEALSCPQGMILVTGP TGSGKTVTLYSGLRQLNDAQSNLCSVEDPIEIPLFGVNQTQINPKTELDFSRVLRALLRQDPDVIMIGEIRDRETAEIAV KAAQTGHLVLSTLHTNSTSETLTRLTHMGIPGYLIAACLKLVIAQRLVRKLCSHCRYQQNLPVHFPTAIWATPLLPWQAD GCEHCFSGYYGRTGVYELLMITPEVQAGLLQGAAPGQLADIARQQGQITLLQAGLTLVSQGLTSLEEVYRIVGITAESGA TP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-73 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-73 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_008136856.1 | protein transport protein HofB | VFG0112 | Protein | 3e-94 | 50 |
| hofB | YP_008136856.1 | protein transport protein HofB | VFG1880 | Protein | 2e-89 | 48 |
| hofB | YP_008136856.1 | protein transport protein HofB | VFG2426 | Protein | 4e-77 | 47 |
| hofB | YP_008136856.1 | protein transport protein HofB | VFG0233 | Protein | 7e-79 | 47 |
| hofB | YP_008136856.1 | protein transport protein HofB | VFG0182 | Protein | 1e-76 | 46 |
| hofB | YP_008136856.1 | protein transport protein HofB | VFG2048 | Protein | 2e-74 | 44 |
| hofB | YP_008136856.1 | protein transport protein HofB | VFG1876 | Protein | 3e-75 | 44 |
