|
Name : yfcU (SOD_c45260) Accession : YP_008140675.1 Strain : Serratia odorifera 4Rx13 Genome accession: NC_021591 Putative virulence/resistance : Virulence Product : outer membrane usher protein YfcU Function : - COG functional category : - COG ID : - EC number : - Position : 5084448 - 5086982 bp Length : 2535 bp Strand : - Note : - DNA sequence : ATGGTGTTTTTTCCTGCTGGGACGCGGTTCCGTATTCGGTTGTTAAGGGCCTGTATTTGTCTGGCGATAAGTTCTGTGGT GCCGCTGGGCTATGCCGATGACGGCATACAGTTCAATACCGACGTGCTGGATGTGAATGACCGAAAAAATATCGACCTGA GCCAGTTCTCCCGCAGCGGTTACATGATGCCGGGGGCATATAGCCTGACGGTGCACATCAACAAGAATGAGCTGCCGGAG CAGGACATTCATTTTTACCCGCCGGACGACGACCCGAAAGGCAGCCAGGCCTGCCTTTCGCCGGCGCTGGTAGAGCAACT GGGGCTGAAGGCCGACGCACTGAAAGTGCTGACCTGGTGGCACCAGGACCAATGTCTGGATATCGCCAGCCTGAAAGGGA TGGAAGCCCGGGGCGATCTGGCCACCGCGGCGCTGTATCTGAGCATTCCGCAGGCTTACCTGGAATATTCTTCGCCGGAC TGGGATCCGCCATCGCGCTGGGATGAGGGTATTTCGGGGCTGTTGTTTGATTACAACCTCAATGGCCAGACCCAGCGCCA GCAACGCGACGGCTCACAGCACTCTAGCCTGAGCGGCAACGGTACCACCGGCGGCAACCTGGGGGCCTGGCGGCTGCGGG CAGACTGGCAGGCGCAGCTCAATCACCAGACCGGTTCCGGACAGGGCACAGACCAACAGCTGGACTGGAGCCGCTATTAC GCCTACCGCGCGCTGCCGGCGTTGCGCTCGCGGCTGACGTTGGGGGAGGACTACCTCAACTCCGGCTTGTTCGACAGCTT CCGGTTTACCGGCGCCAGCCTGGTCTCGGACGACAATATGCTGCCGCCGAACCTGCGCGGTTATGCGCCGGAAGTGGCAG GGGTGGCGAAGACCAACGCCAAGGTCACGATCAGCCAACAGGGGCGGGTGATTTACGAGACCCAGGTGGCGGCGGGGCCG TTCCGCATTCAGGACATCAGCGAAGCGGTGTCCGGCGAGCTGGACGTGCGGGTGGAAGAGCAGGACGGCAGCGTGCAGGC ATTCAAGATGAACACCGCCAGCATTCCTTATCTGACGCGCCCTGGTTCGGTGCGTTTCAAAGCGGCGGCGGGGCGACCTT CGGACTGGCAGCACCGTACCAACGGCCCGTTATTCGGCACCGGGGAATTTTCCTGGGGGGTGAGCAACGGTTGGTCGCTG TATGGCGGCGCGCTGGGCGGCGGCGATTACAACGCGGCCTCATTGGGTATCGGCCGCGACCTGATGGCGCTGGGGGCGTT GTCGTTTGACGCCACCCAATCGCGGGCGCGTTTGCCGCAGCAGGACGGCACGCTGAGCGGCGTCTCATACCGCCTGAGCT ATTCGAAGAGCTTTGACAAGCTGGACAGCCAGGTGACCTTTGCCGGCTACCGCTTCTCGGAGCAGGACTTCATGAGCATG AGCGAGTACCTGGACGCGCGCTATTACGGCAACCGGGTCGGTGGCAGCAAGGAGATGTATACCATCACCTTCAACCAGCA GTTCCGCGATGCGGGGGCCAGTTTGTACCTGAACTACGACCACCAGACTTACTGGGATCGGCCGGTGAATGACCGTTACA ACCTGACGCTGTCGCGTTACTTCGACATCGGCCGGTTCAAGAACCTGAGCCTGTCATTGTCCGGTTATCGCAATAAATAC AACGGCAGCAACGACGACGGCATGTACCTGTCGCTGTCGATGCCCTGGGGCAACGGCGCCAACGTCAGTTACAACACCTC GGTGAACCGTAACGACACCAGCCACCGGGTGGGAATTTACGACCGGATTGACGAGCACGACAACTACCAGTTGAGCGCGG GCCACTCACGCGGCGGCGCCAACCTGAGCGGTTACTACAACCACGAGGGAGATATTGCCCGGTTGAGCGCCAACGCTAGT TACCAGGAAGGCAGCTACAGCGCGCTGGGCTTCTCCGCCCAGGGCGGTGCGACGCTGACGCCGCAGGGCGGCGCACTGCA CCGCATCGGCATGCCGGGCGGCACCCGCCTGCTGGTGGACACCGGCGGCGTGGCCGGGGTACCGGTACGCGGCTACGGCA GCACCAGTAACACCAACAGGTTTGGCAAGGCGGTGGTGACGGACGTGAGTAACTACTACCGCAACCAGGCCAGCATTGAT CTGAACAAGCTGGGTGACAACGCGGAGGCCACCAAATCGGTGGTGCAGGCCACCCTGACCGAGGGCGCGATCGGTTATCG GAAATTTGACGTGATCGCCGGGGAGAAGGCGATGGCAGTGATCACCCTGGCGGATGGCAGCACCCCGCCGTTCGGCGCCA CGGTGATGAACGCCAACAAGCAGGATACAGGGATTGTGAACGACGGCGGCAGCGTTTACCTGAGTGGCATTCAGGCCGGT GACCGCATGACGGTGCACTGGAACGGCGCGGCGCAGTGCGCCATCAGCCTGCCGAAGACGCTGCCAGACAGCACGCTGAG CAACCTGCTGTTGCCGTGCCAGGCATTGCCGGCGGCAGAGGCAGACGCGCAGTAA Protein sequence : MVFFPAGTRFRIRLLRACICLAISSVVPLGYADDGIQFNTDVLDVNDRKNIDLSQFSRSGYMMPGAYSLTVHINKNELPE QDIHFYPPDDDPKGSQACLSPALVEQLGLKADALKVLTWWHQDQCLDIASLKGMEARGDLATAALYLSIPQAYLEYSSPD WDPPSRWDEGISGLLFDYNLNGQTQRQQRDGSQHSSLSGNGTTGGNLGAWRLRADWQAQLNHQTGSGQGTDQQLDWSRYY AYRALPALRSRLTLGEDYLNSGLFDSFRFTGASLVSDDNMLPPNLRGYAPEVAGVAKTNAKVTISQQGRVIYETQVAAGP FRIQDISEAVSGELDVRVEEQDGSVQAFKMNTASIPYLTRPGSVRFKAAAGRPSDWQHRTNGPLFGTGEFSWGVSNGWSL YGGALGGGDYNAASLGIGRDLMALGALSFDATQSRARLPQQDGTLSGVSYRLSYSKSFDKLDSQVTFAGYRFSEQDFMSM SEYLDARYYGNRVGGSKEMYTITFNQQFRDAGASLYLNYDHQTYWDRPVNDRYNLTLSRYFDIGRFKNLSLSLSGYRNKY NGSNDDGMYLSLSMPWGNGANVSYNTSVNRNDTSHRVGIYDRIDEHDNYQLSAGHSRGGANLSGYYNHEGDIARLSANAS YQEGSYSALGFSAQGGATLTPQGGALHRIGMPGGTRLLVDTGGVAGVPVRGYGSTSNTNRFGKAVVTDVSNYYRNQASID LNKLGDNAEATKSVVQATLTEGAIGYRKFDVIAGEKAMAVITLADGSTPPFGATVMNANKQDTGIVNDGGSVYLSGIQAG DRMTVHWNGAAQCAISLPKTLPDSTLSNLLLPCQALPAAEADAQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 51 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 1e-163 | 47 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 2e-162 | 47 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 3e-162 | 47 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 1e-163 | 47 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 2e-163 | 47 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-163 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yfcU | YP_008140675.1 | outer membrane usher protein YfcU | VFG1548 | Protein | 7e-164 | 47 |
| yfcU | YP_008140675.1 | outer membrane usher protein YfcU | VFG0884 | Protein | 6e-164 | 47 |
| yfcU | YP_008140675.1 | outer membrane usher protein YfcU | VFG0895 | Protein | 7e-164 | 47 |
