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Name : pmfC (SOD_c44710) Accession : YP_008140620.1 Strain : Serratia odorifera 4Rx13 Genome accession: NC_021591 Putative virulence/resistance : Virulence Product : outer membrane usher protein PmfC Function : - COG functional category : - COG ID : - EC number : - Position : 5027868 - 5030354 bp Length : 2487 bp Strand : + Note : - DNA sequence : ATGACGTCATTACTGACACGGAAAAAAAGACCCCTTACCGTCATTCTATCTTTCCTCTGGGCGCATTCGGCTTTTTCCGC CACGGAATTCAATACTGACGTATTGGATATCGGCGATCGCAGCAAAGTGGATTTATCGCGTTTTTCCGACGCCGATTACG TCATGCCCGGCACCTATCTGCTGGATATCAAGATCAACCAGAAAACCCTGCCGCAGCGCCGCATCCAGTATTATCCGTCA GCGGATAAAAAGGACCGATCCCGCGCCTGTCTGCCGCCGGATCTGGTGGAAAAAATGGCGCTGAAAGAAGAAGCCGCCAA AAAAATCATCCTGTGGCACGACAACCAGTGCGCCGATATCAGCGGGATCAAAGGGGCGACCCTTTCCGATCGCATCGGCG GCGGAGTACTGACGATCACCATCCCGCAGGCATGGATGAAATATTCCGATCCGGACTGGACCCCGCCTGAACAATGGGAC GACGGCATTCCCGGCCTGCTGCTGGATTACAGCCTCAGCGGCCAGGTCGGCAAGCAGAGTCACAATAACAACACGTCGGA AAATCTCAGCAGCTACGGCACCCTGGGTGCCAACCTGGGCGCCTGGCGCCTGCGCGCCGATTATCAGGCCAATTACAACC AGCAGGCCGGCCAACGCGACAGCGGCTTTGACTGGAACCAGATCTACGCCTATCGCGCGCTGCCAATGCAAGCAGCCAGA CTGACGCTCGGCGAAATTTATCTCGACTCGAACGTGTTCGATTCCTATCGCTTTACCGGCATCAATCTGGCCAGCGACGA ACGCATGCTGCCGCCGAACCTGCAGGGCTATGCACCGGAAGTGCGCGGCATCGCCAAGAGCAACGCCAAAATCACCGTTT CCCAGGAAGGCCGCACGCTGTACGAAACCACCGTGCCTGCCGGGCCGTTTGTGATCCAGGATCTCAACAGTTCGGTACGT GGCCGGCTGGACGTGAAGGTTGAAGAACAGGACGGCAGCGTCTCCACCTTCCAGGTCGATACCGCCACCATCCCTTATCT GACCCGCCCCGGCTATGTACGCTACAACGTCGCCCTGGGCAAACCCTCGGCTTACGATCACCGCACGCAAGGGCCGCTGT TCTCCGCCAGCGATTTTTCCTGGGGGCTGACCAGTGCCTGGTCACTGTACGGCGGCGCCTTGCTTGGCGACGATTACAAC GCCTGGGCGCTCGGTCTGGGCCGTGACCTGAATATCTTCGGTGCCATGTCGGTGGACATGACGCAGTCAATCGCTCGTCT GCCAGACCAGCCGACTGCCAGCGGCATGTCGTTCAAGGTCAACTACGCCAAGCGTTTCGACGAGTTGAATAGCCAGATCA CCTTCGCAGGCTACCGTTTTTCGCAGCGCAAATTCATGAGCATGTCGCAGTATCTGCAGGCGCGTTACAGCGACTATGAC GATCGCTACAGCGGTCGCGAAAAAGAGCTGTACACCATCACCGCCAGCAAAACCTTTATGGCGGAAGACAGCGCCAAAGC GATCACCGCCTACCTGACCTATTCGCACCAAACCTATTGGGACAAGCGCGCGCAGGATCGCTACGGGCTGTCCGCCAGCA AATTGTTCAACGTCGGTAACATCAGCAACATCACCGCCTCGCTGTCGGCCTACCGTTCGACCTATCAAGGGCGCACCGAT GACAGCGTGATGCTGAATTTCACCGTGCCGATTGGCGATCGTCGCCGCATGGGTTACGCGTTGCAGACCAATAACAGCGA CGTGACGCAAACTGCGTCCTACAACGATTACACCGATCCGAACAACACCTGGCAGCTAAGCGGCGGCTTTAACCAGTCCG GCAAAACCTTGACCAGCGGCTACTACACCCATAACGCCTCGTTCGGCTCACTCAACGCCAACGCTTCGTACCAACAAGAC AGCTACTCCTCCGTCGGCGGTACTTTCCGCAGCGGTATCACCGCTACCCGGTACGGTATAGCGGCGCACCAGAACGCCAG CAATGGCGGCAGCCGGATGATGCTGGATACCGACGGTATCGCCGGGGTGCCGATCAACAACGGCCGCGCCTACAGCAACC GGTTCGGGCTGGCGGTGATTTCCGACATCACCAGCTACTACAACACCGATACCCGCATCGACGTCAACAAGCTGGCTGAC GACGTGGAAGCCACCCGTTCGGTGGTGCAAGGCACGTTGACCGAAGGCGCCATCGGCTATCGCCACTTTGAGGTAGTGAA AGGCAGCAAGCTGCTGGCCACCATCAAACTGGCCGACGGCAGCGAACCGCCGTTCGGCGCTACGGTGCTGAGCGAACGAG GCCGCGAAGTGGCGGTGGTGAACGACGGTGGGTCGGTTTATCTGACCGGTGTGCAACCGCAGGAAAAATTGGACGTCGCC TGGGAGGGCCAGCGCCAGTGCCGCATCGTGATACCGGGCGCCGCCAAGCCGCTGGACCAGTTGCTGCTCCCCTGCGCCAA ACTGTAA Protein sequence : MTSLLTRKKRPLTVILSFLWAHSAFSATEFNTDVLDIGDRSKVDLSRFSDADYVMPGTYLLDIKINQKTLPQRRIQYYPS ADKKDRSRACLPPDLVEKMALKEEAAKKIILWHDNQCADISGIKGATLSDRIGGGVLTITIPQAWMKYSDPDWTPPEQWD DGIPGLLLDYSLSGQVGKQSHNNNTSENLSSYGTLGANLGAWRLRADYQANYNQQAGQRDSGFDWNQIYAYRALPMQAAR LTLGEIYLDSNVFDSYRFTGINLASDERMLPPNLQGYAPEVRGIAKSNAKITVSQEGRTLYETTVPAGPFVIQDLNSSVR GRLDVKVEEQDGSVSTFQVDTATIPYLTRPGYVRYNVALGKPSAYDHRTQGPLFSASDFSWGLTSAWSLYGGALLGDDYN AWALGLGRDLNIFGAMSVDMTQSIARLPDQPTASGMSFKVNYAKRFDELNSQITFAGYRFSQRKFMSMSQYLQARYSDYD DRYSGREKELYTITASKTFMAEDSAKAITAYLTYSHQTYWDKRAQDRYGLSASKLFNVGNISNITASLSAYRSTYQGRTD DSVMLNFTVPIGDRRRMGYALQTNNSDVTQTASYNDYTDPNNTWQLSGGFNQSGKTLTSGYYTHNASFGSLNANASYQQD SYSSVGGTFRSGITATRYGIAAHQNASNGGSRMMLDTDGIAGVPINNGRAYSNRFGLAVISDITSYYNTDTRIDVNKLAD DVEATRSVVQGTLTEGAIGYRHFEVVKGSKLLATIKLADGSEPPFGATVLSERGREVAVVNDGGSVYLTGVQPQEKLDVA WEGQRQCRIVIPGAAKPLDQLLLPCAKL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 49 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 0.0 | 48 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 0.0 | 48 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 0.0 | 48 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 0.0 | 48 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 0.0 | 48 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 0.0 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pmfC | YP_008140620.1 | outer membrane usher protein PmfC | VFG1548 | Protein | 0.0 | 48 |
| pmfC | YP_008140620.1 | outer membrane usher protein PmfC | VFG0884 | Protein | 0.0 | 48 |
| pmfC | YP_008140620.1 | outer membrane usher protein PmfC | VFG0895 | Protein | 0.0 | 48 |
