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Name : ldcC (SOD_c37380) Accession : YP_008139897.1 Strain : Serratia odorifera 4Rx13 Genome accession: NC_021591 Putative virulence/resistance : Virulence Product : lysine decarboxylase, constitutive Function : - COG functional category : - COG ID : - EC number : 4.1.1.18 Position : 4205304 - 4207460 bp Length : 2157 bp Strand : - Note : - DNA sequence : ATGAATATCATCGCAATCATGAGCCCAACGGGCGTCTATTACAAAGATGAGCCTATTCGTGAGCTGCACACCGCATTGGC TACGATGGGTTTCCAGTTGGTTTACCCGAAAAATGGCGGTGATCTGCTGAAGCTGATCGAGGCCAATGCGCGTATTTGCG GAGTGATTTTCGATTGGGACGACTACAGCCTGGAGCTGTGCAGCGAAATTAACGAGCTGAATGAATATCTGCCGCTATAT GCGTTTATCAACCAGTATTCCACCTTCGACGTCAGTCTGCATGAAATGCGCATGGTGCTGTATTTCTTTGAGTATGGCTT GAATGCGGCAGATGATATTGCGCAGCGTATCCAGCAATACACCGCAGAATATATCGACACCATTACGCCGCCCTTAACCA AGGCACTATTCAACTATGTGCGCGAGGGCAAATACACTTTTTGCACCCCAGGGCATATGGCCGGCACTGCCTTCCAGAAA AGCCCGGTTGGCTGCCTGTTTTACGATTTTTTCGGTGCCAACACCTTAAAAGCCGACGTCTCCATATCGGTGACCGAGCT GGGTTCGCTGCTGGACCATACCGGCCCGCATCTGGAGGCTGAAGAGTATATTGCGCGTACCTTTAACGCCGAGCAGAGCT ATCTGGTGACCAATGGCACCTCCACCGCCAACAAGATTGTCGGCATGTATTCGGCCCCGGCAGGCAGCACGGTGTTGATT GACCGCAACTGCCATAAATCGCTGTGCCATCTGCTGATGATGAGCGATATCGTCCCGATCTACCTGCGCCCGCTGCGTAA TGCCTACGGCATTCTTGGCGGTATTCCGCAGCATGAGTTTACCCATGAGAGCATTGCCGGCCGGGTCGCCGCCACTGCGA ATGCCAGTTGGCCGGTACATGCGGTGATCACCAACTCGACTTATGACGGCCTGCTGTATAACACCGATTACATCAAGCAG ACGCTGGATGTGCCATCAATCCATTTTGACTCCGCCTGGGTACCCTATACCAACTTCCATCCAATCTACGAAGGCAAGAG TGGTATGAGCGGTGAACGGACGCCCGGCAAGGTGATCTACGAAACGCAGTCCACGCACAAGCTGCTAGCGGCATTCTCGC AGGCCTCAATGATTCACATTAAAGGCGATTACGACGAAAGCACCTTTAACGAAGCTTATATGATGCATACCACCACTTCG CCGAACTACGGCATTGTGGCGTCGATGGAGACTGCCGCCGCAATGCTGCGCGGCAACCCTGGGCGACGGTTGATTAACCG CTCGGTAGAGCGCGCGCTGCATTTCCGTCGTGAGGTGCAGCGGTTGCGGGAGGAGAGCGATAGCTGGTTCTTCGATATCT GGCAGCCTGAAGAGATCGACGAGGCGCAATGCTGGCCGTTGAACCCGGACGATAATTGGCATGGGTTTGGCAATACCGAC AGCGATCATATGTATCTCGATCCGATCAAGGTGACGATCCTGACGCCGGGAATGAACGAGCTGGGTACGCTGGAGGAGAG CGGGATCCCGGCGGCGCTGGTGGCGAAATACCTGGACGAGTGCGGCATCGTGGTGGAAAAAACCGGGCCTTATAATCTGC TGTTCCTGTTCAGCATCGGCATTGATAAAACCAAGGCGATGAGCTTACTGCGTGGCCTGACCGATTTTAAACGTGCTTAC GATCTTAATCTGCGGGTGAAGAACATGCTGCCGGATCTGTTCGCGGAGGATCCTGATTTCTATCGCAATATGCGCATTCA AGATCTGGCGGCCGGGATCCACCGGTTGATCTGCCGGCACGATCTGCCGCGGCTGATGCTGCGGGCATTCGATGTGCTGC CGGAAATGAAGCTGACGCCGCACCAAATGTTCCAGCAGCAGGTACGTGGCAATGTGGAAACCTGCGAACTGGATCAACTG GTGGGTAAGGTGGCGGCCAATATGATCCTGCCTTATCCACCAGGCGTGCCGTTAGTGATGCCGGGTGAGATGATCACTGA AGAGAGCCGTGCGGTGCTCGATTTCTTGCTGATGCTGTGCTCCATCGGCGAGCGTTATCCCGGCTTTGAAACCGATATCC ACGGTGCGAAATTGACCGAGGACGGGCGTTATCTGGTGAAGGTACTGAAAACGCCGCCGGCCGATATCAACGTTTGA Protein sequence : MNIIAIMSPTGVYYKDEPIRELHTALATMGFQLVYPKNGGDLLKLIEANARICGVIFDWDDYSLELCSEINELNEYLPLY AFINQYSTFDVSLHEMRMVLYFFEYGLNAADDIAQRIQQYTAEYIDTITPPLTKALFNYVREGKYTFCTPGHMAGTAFQK SPVGCLFYDFFGANTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFNAEQSYLVTNGTSTANKIVGMYSAPAGSTVLI DRNCHKSLCHLLMMSDIVPIYLRPLRNAYGILGGIPQHEFTHESIAGRVAATANASWPVHAVITNSTYDGLLYNTDYIKQ TLDVPSIHFDSAWVPYTNFHPIYEGKSGMSGERTPGKVIYETQSTHKLLAAFSQASMIHIKGDYDESTFNEAYMMHTTTS PNYGIVASMETAAAMLRGNPGRRLINRSVERALHFRREVQRLREESDSWFFDIWQPEEIDEAQCWPLNPDDNWHGFGNTD SDHMYLDPIKVTILTPGMNELGTLEESGIPAALVAKYLDECGIVVEKTGPYNLLFLFSIGIDKTKAMSLLRGLTDFKRAY DLNLRVKNMLPDLFAEDPDFYRNMRIQDLAAGIHRLICRHDLPRLMLRAFDVLPEMKLTPHQMFQQQVRGNVETCELDQL VGKVAANMILPYPPGVPLVMPGEMITEESRAVLDFLLMLCSIGERYPGFETDIHGAKLTEDGRYLVKVLKTPPADINV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 76 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ldcC | YP_008139897.1 | lysine decarboxylase, constitutive | VFG1670 | Protein | 0.0 | 64 |
