Gene Information

Name : pmrA (SOD_c03520)
Accession : YP_008136571.1
Strain : Serratia odorifera 4Rx13
Genome accession: NC_021591
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein PmrA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 385088 - 385750 bp
Length : 663 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACTGCTGATTGTTGAAGACGATGAGCTGTTGCAGCAAGGGCTGGCGCTGGCATTGGCCAACGAGGGTTATGCCTG
CGACTGCGCCGCTACGGCGGCGCAAGCCAATGCGCTGCTCATTACCAGCCAATACAGCATGATCATCCTCGATCTCGGTC
TGCCCGACCAGGACGGCGCCAGCCTGCTGCGGCAGTGGCGCCGTCAGCAAGTCGACTTACCGGTGCTGATCCTCACCGCC
CGCGACGCACTGGAAGACCGTGTCGACGGGCTGGACGCCGGTGCTGACGATTACCTGGTGAAGCCCTTCGCGCTGGTTGA
GCTGCAGGCGCGGGTACGCGCCTTAATCCGCCGCTATCAGGGCCACAGCGACAACCTCATGCAACTGGACGATCTCCAGC
TCAATCTTTCCAGCCAGCAGGTTTACGTTCAACAACAGCCGGTTGAAGTCACGCCAAAAGAGTTCGCCATCCTGTCTCGC
CTTATGATGCGCGCCGGGCAAACGGTCAATCGTGAACTGCTGCAGCAGGACCTTTACACCTGGCAGGATGATTTAGGTTC
CAACACGCTGGAAGTGCATATCCATAACCTGCGCCGCAAATTGGGCAAGGATCGCATCCGTACCGTCCGCGGTATCGGTT
ATCGCCTGGAATCCTCATCATGA

Protein sequence : 
MKLLIVEDDELLQQGLALALANEGYACDCAATAAQANALLITSQYSMIILDLGLPDQDGASLLRQWRRQQVDLPVLILTA
RDALEDRVDGLDAGADDYLVKPFALVELQARVRALIRRYQGHSDNLMQLDDLQLNLSSQQVYVQQQPVEVTPKEFAILSR
LMMRAGQTVNRELLQQDLYTWQDDLGSNTLEVHIHNLRRKLGKDRIRTVRGIGYRLESSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-29 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pmrA YP_008136571.1 transcriptional regulatory protein PmrA BAC0487 Protein 7e-50 66
pmrA YP_008136571.1 transcriptional regulatory protein PmrA CP000647.1.gene1136. Protein 3e-22 43
pmrA YP_008136571.1 transcriptional regulatory protein PmrA BAC0530 Protein 3e-22 43
pmrA YP_008136571.1 transcriptional regulatory protein PmrA NC_002516.2.879194.p Protein 3e-21 42
pmrA YP_008136571.1 transcriptional regulatory protein PmrA CP001918.1.gene2526. Protein 2e-22 41
pmrA YP_008136571.1 transcriptional regulatory protein PmrA CP001138.1.gene1939. Protein 4e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pmrA YP_008136571.1 transcriptional regulatory protein PmrA VFG0473 Protein 2e-43 57
pmrA YP_008136571.1 transcriptional regulatory protein PmrA VFG0475 Protein 4e-22 41