Gene Information

Name : nodW (SOD_c28290)
Accession : YP_008139008.1
Strain : Serratia odorifera 4Rx13
Genome accession: NC_021591
Putative virulence/resistance : Virulence
Product : nodulation protein W
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3166941 - 3167561 bp
Length : 621 bp
Strand : +
Note : -

DNA sequence : 
ATGGAACATGTCGTTTATGTCGTCGATGATGACCATTCGGTCAGGCAATCTATTGTCAGGCTGTTAAACTCTGCCGGCTA
CAATGCCGTTGATTTTGACTGCGCAGAGGCCTTTCTTACACATGCCTTTCCCGCCATACCCGGCTGTATCATTCTGGATA
TGCGCATGCCGAGCGGAGATGGTTTCGCGGTAACCGATGCGCTGAAAGCAAGCGGCCGGGAAATGCCGGTGATCTTCCTT
ACCGGCTACGGCACCATCCCGCTGTCGGTGCAGGCGATGAAAGCCGGTGCACATGAGTTTTTGACCAAACCCGTCGCTTC
CGACGATCTGCTCAAGGCGGTTCAGGAAGCCCTCAATCTGGCCGCGGAAAATTCAGATCAGTTGCGCGAGCATTACGAAC
TGAAACAGCGGCACCTCACGCTGACGCCGCGCGAACAAGAAGTGCTGGAGCTGACGATTAAAGGCTTGATGAATAAACAG
ATTGCTGCAGAGCTGGGCGTCAGTGAAATTACGGTCAAGGTACATCGTCGCCGGGTGATGGATAAAATGCAGGTGCGTTC
TCTCGCGGATTTGGTGCGTCATGCCGAGCGGTTAAATCTCAGTAAATCCAAAGCATCCTGA

Protein sequence : 
MEHVVYVVDDDHSVRQSIVRLLNSAGYNAVDFDCAEAFLTHAFPAIPGCIILDMRMPSGDGFAVTDALKASGREMPVIFL
TGYGTIPLSVQAMKAGAHEFLTKPVASDDLLKAVQEALNLAAENSDQLREHYELKQRHLTLTPREQEVLELTIKGLMNKQ
IAAELGVSEITVKVHRRRVMDKMQVRSLADLVRHAERLNLSKSKAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrR YP_216395.1 tetrathionate reductase complex: response regulator Virulence SPI-2 Protein 9e-28 41
ttrR NP_456141.1 putative two-component response regulator Not tested SPI-2 Protein 9e-28 41
ttrR NP_805058.1 two-component response regulator Virulence SPI-2 Protein 9e-28 41
ttrR CAB37412.1 TtrR Virulence SPI-2 Protein 7e-28 41
ttrR NP_460352.2 response regulator Virulence SPI-2 Protein 1e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
nodW YP_008139008.1 nodulation protein W VFG0488 Protein 3e-28 41