Gene Information

Name : yfeC (SOD_c19450)
Accession : YP_008138128.1
Strain : Serratia odorifera 4Rx13
Genome accession: NC_021591
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein YfeC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2116683 - 2117579 bp
Length : 897 bp
Strand : -
Note : -

DNA sequence : 
ATGCTGGACATTTTGCTGCAACCCTTCCATTACAACTACATGGTCAAAGCGATCTGGGTCAGCGCCATCGTCGGCGCTGC
CTGCGCGTTCCTGTCGGCCTACCTGATGCTGAAAGGCTGGTCGCTGATGGGTGATGCGCTGTCGCACTCGGTGGTGCCTG
GCGTCGCCGGGGCCTATGCCCTTGGTCTGCCGTACGCCGCCGGGGCCTTCTTCACCGGCATGCTGGCCGCGCTGGCCATG
ACGCTGGTACGCCACGTCACCCGCCTGCGCGAAGACGCCATCATCGGCTTTATTTTTTCGACCTTCTTCGCCGTTGGGCT
GCTGATCATTTCACTCAATCCTACGTCGATTAACGTGCAGTCGATTATCTTCGGCAATATTCTCGGCATCGCCGACGAAG
ACGTGCTGCAGGTCGAGATTATCATCGGCGTTTCGCTGCTGATTCTGTGCCTGGTGTGGAAAGACCTGCTGGCGGTGTTC
TTTGACGAAAGCCACGCGGTGTCGATTGGTCTGTCGCCGCTGCGGATGAAAATCCTGTTCTTCACCCTGCTCAGCGCCTG
CACCGTCGCGGCGCTACAAACCGTCGGGGCGATTTTGGTGATCGCCATGGTGATTACGCCAGGCGCCACCGCCTATCTGC
TGACCGACCGCTTTAGCCGTTTAGTGATCATCGCCATCGTCATCGGCGCACTGACCAGCGGTGTCGGTGCCTACCTGAGC
TTCTTCCTTGACGGCGCTACCGGCGGCGTGATCGTGACCCTGCAGACGCTGGTGTTCCTGGCGGCGTTTTTCTTCGCCCC
CAAACACGGCCTGCTGGCGTCCCGGCGCCGCGTCGCCGCGTCGCCCGTGAACAGACCGGAGGCCACTGATGGAAACCCTG
TATCAACTGCTCAGTGA

Protein sequence : 
MLDILLQPFHYNYMVKAIWVSAIVGAACAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAAGAFFTGMLAALAM
TLVRHVTRLREDAIIGFIFSTFFAVGLLIISLNPTSINVQSIIFGNILGIADEDVLQVEIIIGVSLLILCLVWKDLLAVF
FDESHAVSIGLSPLRMKILFFTLLSACTVAALQTVGAILVIAMVITPGATAYLLTDRFSRLVIIAIVIGALTSGVGAYLS
FFLDGATGGVIVTLQTLVFLAAFFFAPKHGLLASRRRVAASPVNRPEATDGNPVSTAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-76 68
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-76 68
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-76 68
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-76 68
sitC NP_461784.1 permease Virulence SPI-1 Protein 4e-76 68
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-41 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 9e-41 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-40 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-40 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-40 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_008138128.1 chelated iron transport system membrane protein YfeC BAC0441 Protein 1e-102 88
yfeC YP_008138128.1 chelated iron transport system membrane protein YfeC BAC0351 Protein 2e-76 68
yfeC YP_008138128.1 chelated iron transport system membrane protein YfeC BAC0352 Protein 4e-41 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_008138128.1 chelated iron transport system membrane protein YfeC VFG0527 Protein 2e-76 68
yfeC YP_008138128.1 chelated iron transport system membrane protein YfeC VFG0528 Protein 4e-41 43