Gene Information

Name : rob4 (SOD_c17610)
Accession : YP_008137946.1
Strain : Serratia odorifera 4Rx13
Genome accession: NC_021591
Putative virulence/resistance : Resistance
Product : right origin-binding protein Rob
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1924857 - 1925213 bp
Length : 357 bp
Strand : +
Note : -

DNA sequence :
ATGAACAGCACGGGTTTTATTACCGATTTGATTGAGTGGATTGACAACAATCTGGAAGAGAAGCTGGATATCAATACCGT
GGCGGACCGCGCGGGATATTCCAAATGGCACCTGCAGCGCATGTTCAAACGCCAGACCGGCTATGCGTTGGGGGAGTATA
TCCGCATGCAAAAGCTGAAGGTTTCCGCAGAGCGCCTGGCCAACAGCGGCGAGCCTATCGTCAGCGTGGCGATATCACTT
GGCTTTGACTCGCAGCAATCCTTCAATCGCAGTTTTAAACGCCAATTCGGCCAGACTCCGGGCGACTGGCGCCGTGCTGT
GATGCAGCCGCAGATCGCCGCCAGTCGCGCACACTGA

Protein sequence :
MNSTGFITDLIEWIDNNLEEKLDINTVADRAGYSKWHLQRMFKRQTGYALGEYIRMQKLKVSAERLANSGEPIVSVAISL
GFDSQQSFNRSFKRQFGQTPGDWRRAVMQPQIAASRAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 5e-23 47
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 4e-18 44
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 4e-18 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rob4 YP_008137946.1 right origin-binding protein Rob CP000647.1.gene1624. Protein 3e-23 49
rob4 YP_008137946.1 right origin-binding protein Rob BAC0371 Protein 1e-23 47
rob4 YP_008137946.1 right origin-binding protein Rob CP001138.1.gene4488. Protein 2e-23 47
rob4 YP_008137946.1 right origin-binding protein Rob NC_002695.1.914293.p Protein 1e-23 47
rob4 YP_008137946.1 right origin-binding protein Rob BAC0560 Protein 2e-24 47
rob4 YP_008137946.1 right origin-binding protein Rob NC_002695.1.917339.p Protein 2e-24 47
rob4 YP_008137946.1 right origin-binding protein Rob CP000034.1.gene1596. Protein 2e-24 47
rob4 YP_008137946.1 right origin-binding protein Rob CP000034.1.gene4505. Protein 3e-23 46
rob4 YP_008137946.1 right origin-binding protein Rob CP001918.1.gene2033. Protein 1e-23 46
rob4 YP_008137946.1 right origin-binding protein Rob CP001138.1.gene1637. Protein 4e-24 46
rob4 YP_008137946.1 right origin-binding protein Rob CP001918.1.gene327.p Protein 1e-23 45
rob4 YP_008137946.1 right origin-binding protein Rob CP000647.1.gene4499. Protein 7e-24 45
rob4 YP_008137946.1 right origin-binding protein Rob CP001138.1.gene612.p Protein 3e-21 45
rob4 YP_008137946.1 right origin-binding protein Rob NC_010558.1.6276025. Protein 2e-18 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rob4 YP_008137946.1 right origin-binding protein Rob VFG0585 Protein 2e-23 47
rob4 YP_008137946.1 right origin-binding protein Rob VFG1038 Protein 2e-18 44