Gene Information

Name : ydfF1 (SOD_c14090)
Accession : YP_008137600.1
Strain : Serratia odorifera 4Rx13
Genome accession: NC_021591
Putative virulence/resistance : Virulence
Product : putative HTH-type transcriptional regulator YdfF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1530116 - 1530799 bp
Length : 684 bp
Strand : -
Note : -

DNA sequence : 
ATGAATGACATCGATATTGAAGATCGCCTGGCGGCACTGACTGCCGCTATCGCCGACCGCACCCGTGCACGCATGTTGTG
CCTGCTGATGGACGGCCGCGCCTATACGGCCACCGAGCTCAGCGCTGCCGTGGACGTCGCCGCCTCTACCGCCAGCGGGC
ATTTGGCGCGCTTGCAGGAACAACGGTTGATCGCCTGCGTCAAACAGGGGCGCTATCGCTATTTCCGCCTGGCGGGGCAG
CCGGTGGCCGATGTGCTGGAAACGCTGATGGCGCTGGCCGGCGTCGAACGGCCGGCGGTGAAAAGCACTACCCCCACCTC
GCTGCAATTCGCCCGCACCTGCTACGATCATATGGCCGGTGAAGTGGCGGTAAAACTGCATGACCGTTTGCATCGGTTGA
CCTGGCTGGTGGGCGAGGAAGACTACCGGCTGAGCGACGCGGGGCGGGCTGCCCTGACGCGGTTGGGTGTCGACTGCACG
CCCGCGCCTTCACGGCGGCGCTTCGCCTGCGGCTGTCTGGACTGGAGCGAACGCAAGGCTCACCTCGGTGGCGCACTTGG
CGCAGCAATGCTTAACGCTTTTATCGAACGCGGCTGGATAAGGCGCCGGCTCGATAGCCGCGAGCTGCAACTCACCGCCA
CCGGCAAGAATGCTCTGAAAGCACATTTTGACCTCACGCTTTAG

Protein sequence : 
MNDIDIEDRLAALTAAIADRTRARMLCLLMDGRAYTATELSAAVDVAASTASGHLARLQEQRLIACVKQGRYRYFRLAGQ
PVADVLETLMALAGVERPAVKSTTPTSLQFARTCYDHMAGEVAVKLHDRLHRLTWLVGEEDYRLSDAGRAALTRLGVDCT
PAPSRRRFACGCLDWSERKAHLGGALGAAMLNAFIERGWIRRRLDSRELQLTATGKNALKAHFDLTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AEA34669.1 hypothetical protein Not tested Not named Protein 2e-35 44
unnamed AAL08443.1 unknown Not tested SRL Protein 5e-23 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ydfF1 YP_008137600.1 putative HTH-type transcriptional regulator YdfF VFG1034 Protein 3e-23 42