Gene Information

Name : czcR (SOD_c13850)
Accession : YP_008137576.1
Strain : Serratia odorifera 4Rx13
Genome accession: NC_021591
Putative virulence/resistance : Virulence
Product : transcriptional activator protein CzcR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1501367 - 1502038 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence :

ATGCGGATATTGGTGATTGAAGACGACATCAGCACGGGTGATTACCTGAAAAAAGGGCTGGGAGAGGCGGGGTACAGCGT
CGATCTGGCGCGTAACGGCACTGACGGGCTGTTCCGGGCGCTGGAGCACGGTTACGACGCCATCGTGCTCGACGTGATGC
TGCCGGGGCTGGACGGCTGGCAGATAGTGGAAGTGCTGCGCAAGAAAAGCGATGTGCCGATCCTGTTTCTGACTGCGCGT
GACGGGGTGCAGGATCGCATTCATGGCCTGGAACTGGGGGCCGAGGATTATTTGATCAAACCCTTTTCCTTCACTGAGCT
GGTGTTGCGTATCCGCACGCTGCTGCGGCGCGGTACGGTGCGTGAAGCCGATCACTACAGCCTTGCCGATCTGCAACTCG
ACGTATTGCGCCGCAAGGCGGTGCGGCAGGATGTGGTGATCCCGCTGACCAATAAGGAGTTTATGCTGTTGCACCTGTTG
GTGCGGCGCGAAGGAGAGGTGCTGTCGCGCACCCTGATCGCCTCGCAGGTTTGGGACATGAATTTTGACAGCGACACCAA
CGTGGTGGATGTGGCGATCAAACGCCTGCGCGCCAAGATTGACCGACCGTTCGCTATCAAGCTGATTCATACCGTGCGCG
GCATCGGTTATGTCTGCGAGCCGCGCTCATGA

Protein sequence :

MRILVIEDDISTGDYLKKGLGEAGYSVDLARNGTDGLFRALEHGYDAIVLDVMLPGLDGWQIVEVLRKKSDVPILFLTAR
DGVQDRIHGLELGAEDYLIKPFSFTELVLRIRTLLRRGTVREADHYSLADLQLDVLRRKAVRQDVVIPLTNKEFMLLHLL
VRREGEVLSRTLIASQVWDMNFDSDTNVVDVAIKRLRAKIDRPFAIKLIHTVRGIGYVCEPRS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
copR	NP_460069.2	transcriptional regulatory protein YedW	Not tested	SPI-5	Protein	3e-54	54
copR	AAC33719.1	regulatory protein CopR	Not tested	SPI-5	Protein	2e-53	54

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
czcR	YP_008137576.1	transcriptional activator protein CzcR	BAC0125	Protein	6e-66	62
czcR	YP_008137576.1	transcriptional activator protein CzcR	BAC0197	Protein	9e-66	62
czcR	YP_008137576.1	transcriptional activator protein CzcR	BAC0308	Protein	6e-61	60
czcR	YP_008137576.1	transcriptional activator protein CzcR	BAC0638	Protein	1e-56	60
czcR	YP_008137576.1	transcriptional activator protein CzcR	BAC0083	Protein	2e-62	59
czcR	YP_008137576.1	transcriptional activator protein CzcR	BAC0111	Protein	2e-60	57
czcR	YP_008137576.1	transcriptional activator protein CzcR	BAC0347	Protein	1e-52	52
czcR	YP_008137576.1	transcriptional activator protein CzcR	AE000516.2.gene3505.	Protein	2e-28	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
czcR	YP_008137576.1	transcriptional activator protein CzcR	VFG0596	Protein	1e-54	54
czcR	YP_008137576.1	transcriptional activator protein CzcR	VFG1390	Protein	3e-38	44
czcR	YP_008137576.1	transcriptional activator protein CzcR	VFG1389	Protein	1e-34	43
czcR	YP_008137576.1	transcriptional activator protein CzcR	VFG1386	Protein	2e-33	42