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Name : yfcU1 (SOD_c12060) Accession : YP_008137397.1 Strain : Serratia odorifera 4Rx13 Genome accession: NC_021591 Putative virulence/resistance : Virulence Product : outer membrane usher protein YfcU Function : - COG functional category : - COG ID : - EC number : - Position : 1327415 - 1329961 bp Length : 2547 bp Strand : + Note : - DNA sequence : ATGTCAACTACTCCGTCATATGGCTGTATAGGGAAAATACGACCGCGAATTTTGGGGCTGTTGATCGCCTTTATTCTGGC GGGGAATGCTGCCAATGTCGCAGCTGCTGATATTGAATTCAATACCGACGTACTGGATGTGACGGATCGCGCCAATATTG ACCTGGAGCAGTTTTCTCGCGGCAATTTTATTATGCCCGGCGATTATCTGTTTTCCGTGCATATTAATAAACAGACATTA ACCGATCAGCCGGTGGCGTTTTACCCGCCGGATGACGATGCCAAAGGCAGTGAAGCCTGTATTACGCCGCAGTTGGTTGA GCAACTGGGGTTAAAAGAGTCTGCATTACTGAAATTGACCTGGTGGCACCAAAACCAGTGTCTGGATCCCCGCAGCCTGG AGGGGATGGAAGTGCGCGGCGATTTAGGCGCGGCGGCGCTGTACCTGAATATTCCGCAGGCGTATCTGGAATATACCGCA GAAAACTGGGACCCGCCTTCGCGTTGGGACGAGGGGATCCCGGGGGTGCTGTTTGATTACAACCTGAATGCGCAAAGCCA GCGCCAGCAAAAGCAGGGCACGCAGAGTTATAACCTCAGCGGCAACGGCACCCTTGGCGGCAATCTGGGCGCCTGGCGGC TGCGGGCAGACTGGCAATCGCGGCTGGATCACCAGGGTGGCTCGGGCGAGCCGACCCGCACCAGCTGGGACTGGAGTCGT TACTACGCCTACCGCGCACTGCCGAAGCTGGGTGCCAGGCTGACGATGGGCGAGGACTATTTAAACTCCGACATCTTCGA CAGCGTGCGTTTTGCCGGCGCCAGCCTGGTGACCGACGACAACATGCTGCCGCCCAACCTGCGCGGCTATGCGCCGGAGG TGACCGGCGTGGCGCGCAGCAACGCCAAGGTGATTATTCGCCAGCAAGGGCGCGTGTTGTACGAGACCCAGGTGGCGGCG GGGCCATTCCGCATTCAGGACATCAACGATGCGGTCAGCGGCCAGCTGGACGTGCGGGTGGAAGAGCAGGACGGCAGCGT GCAGGAGTTCAAGATGGACACCGCCAGCATCCCGTACCTGACCCGGCCCGGCTCGGTGCGTTACAAGGTGGCGGCCGGCC GGCCGGCGGACTGGGAACACCATAGCGACGGGCCGATGTTCGGCACCGGCGAGTTTTCCTGGGGCGTGAGCAACGGCTGG TCGCTGTACGGCGGCGGCGTGGCGGGCGGCGATTACAACGCGCTGGCGCTGGGGGTGGGGCGTGACCTGATGATGTTCGG CGCACTGTCGTTCGATGCCACCCAGTCGCGCGCCAACCTGCCGCAGCAGGGCACGCTGAGCGGCGGTTCATACCGCCTGA GCTATTCCAAGCGCTTTGACGACTATGACAGCCAGGTGACCTTTGCCGGCTACCGCTTCTCGGAGCGCAACTATATGTCG ATGGGCGAATACCTGGATGCACGCCGCGACGGTACGCGAACCAACAGCAGCAAGGAGATGTACACCATCACCTTTAACCA GCAGTTCCGCGATCTGGGGTTGAGTGCCTATCTCAACTACAACCACCAGACCTACTGGGACCGGCCGGCGAATGACCGTT ACAACCTGACGCTGTCGCGCTATTTCGACCTGGGGCGTTTCCGGAATATCAGCCTGTCGCTGACCGGCTATCGCAATAAA TATAACGGCACCAACGACGACGGCATGTACCTGTCGCTGTCGCTGCCGTGGGGCAGTAATGGCTCGCTGAGCTACAGCGG CAGCTACAACCGCAACGATAACACCCATCAGGTGGGGTATTACGACCGGCTCAATGAGCGCGACACCTATCAGGTGAGCG CCGGTACTGCGCGCAGCGGCGCGACAGCCAGCGGCTACTACAGCCACAGCGGCGATCTCAGCCAGGTGAACGCCAGCGCC AGCTACCAGGCCGGGCAGTACAGCTCGCTGGGGCTGTCGATGCAGGGCGGCGCGACCGCCACCCTGAAAGGGGCGGCCTT GCACCGCAGCAGTATAAGCGGTGGCACCCGCATGTTGCTGGATACCGACGGCGTGCCGGGGATCCCGATCCGCGGTTACA GCTCACCGACGCTGACCAACGCCTTCGGCAAAGCGGTGGTGGTGGATGTCGGCAGTTACTACCGCAACCAGTTCAGTATC GATCTGAACACGTTGCCGGAAAACGCCGAAGTCAGCCAGAGTGTGGCGCAGGCCACCCTGACCGAAGGCGCTATCGGCTA CCGGCACTTTGAGGTGATCGCCGGCGAGAAGGCGATGGCGGTCGTGCGGCTGGCGGACGGTTCTGCCCCGCCGTTTGGCG CCACGGTGCGCAACGGCAAGCGGCAGGAGGTGGGCATTATCAATGACAACGGCGAAGTCTACCTGAGCGGCATCAACGCC GGGGAAGCGATGAGCGTGAGCTGGGGTGGCGCGGAGCAGTGCGGCTTTACCCTGCCGCAGACGCTGTCGCCTGGCCAATT GACCAATCTGTTACTGCCTTGCGGCCCGGTGGCCAACGGCAAGGTGTTAAACACTGTTAAAGAGTAG Protein sequence : MSTTPSYGCIGKIRPRILGLLIAFILAGNAANVAAADIEFNTDVLDVTDRANIDLEQFSRGNFIMPGDYLFSVHINKQTL TDQPVAFYPPDDDAKGSEACITPQLVEQLGLKESALLKLTWWHQNQCLDPRSLEGMEVRGDLGAAALYLNIPQAYLEYTA ENWDPPSRWDEGIPGVLFDYNLNAQSQRQQKQGTQSYNLSGNGTLGGNLGAWRLRADWQSRLDHQGGSGEPTRTSWDWSR YYAYRALPKLGARLTMGEDYLNSDIFDSVRFAGASLVTDDNMLPPNLRGYAPEVTGVARSNAKVIIRQQGRVLYETQVAA GPFRIQDINDAVSGQLDVRVEEQDGSVQEFKMDTASIPYLTRPGSVRYKVAAGRPADWEHHSDGPMFGTGEFSWGVSNGW SLYGGGVAGGDYNALALGVGRDLMMFGALSFDATQSRANLPQQGTLSGGSYRLSYSKRFDDYDSQVTFAGYRFSERNYMS MGEYLDARRDGTRTNSSKEMYTITFNQQFRDLGLSAYLNYNHQTYWDRPANDRYNLTLSRYFDLGRFRNISLSLTGYRNK YNGTNDDGMYLSLSLPWGSNGSLSYSGSYNRNDNTHQVGYYDRLNERDTYQVSAGTARSGATASGYYSHSGDLSQVNASA SYQAGQYSSLGLSMQGGATATLKGAALHRSSISGGTRMLLDTDGVPGIPIRGYSSPTLTNAFGKAVVVDVGSYYRNQFSI DLNTLPENAEVSQSVAQATLTEGAIGYRHFEVIAGEKAMAVVRLADGSAPPFGATVRNGKRQEVGIINDNGEVYLSGINA GEAMSVSWGGAEQCGFTLPQTLSPGQLTNLLLPCGPVANGKVLNTVKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 3e-171 | 51 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 2e-155 | 48 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 3e-154 | 48 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 4e-154 | 48 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 4e-155 | 48 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 3e-155 | 48 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 4e-155 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yfcU1 | YP_008137397.1 | outer membrane usher protein YfcU | VFG1548 | Protein | 1e-155 | 48 |
| yfcU1 | YP_008137397.1 | outer membrane usher protein YfcU | VFG0884 | Protein | 2e-155 | 48 |
| yfcU1 | YP_008137397.1 | outer membrane usher protein YfcU | VFG0895 | Protein | 2e-155 | 48 |
