Gene Information

Name : ypjF (SOD_c10200)
Accession : YP_008137221.1
Strain : Serratia odorifera 4Rx13
Genome accession: NC_021591
Putative virulence/resistance : Virulence
Product : putative toxin YpjF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1123415 - 1123783 bp
Length : 369 bp
Strand : +
Note : -

DNA sequence :
ATGCAGACCTTACCTGTCACCCTTAAACGGGCGGCTCAGCCCTGCCCATCACCCGTTGCCGTCTGGCAGATCTTACTTAC
ATATCTATTGGATCAGCATTACGGCTTGGCGCTTAATGATACCGAGTTCAGTGATGACGCCGTGATCCACGAACATATTG
AAGCCGGTATCTCTCTGGCTGATGCGTTGAATTTCACGGTGGAGAAGTTTGACCTGGTACGCACCGATCGCCGGGGTTTC
TCTTACCTGGAGCAATCCCCTTTCGTGACCGCCATCGATATCTTGCGGGCCCGCCGGGCCACCGGCCTGATGACCCGTAT
GGGTTACCAGGCCATCACGCAGGCTATTCAGGGAGGAAAGCAGGTATGA

Protein sequence :
MQTLPVTLKRAAQPCPSPVAVWQILLTYLLDQHYGLALNDTEFSDDAVIHEHIEAGISLADALNFTVEKFDLVRTDRRGF
SYLEQSPFVTAIDILRARRATGLMTRMGYQAITQAIQGGKQV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67342.1 intergenic-region protein Not tested PAI II CFT073 Protein 9e-33 64
yeeV CAE85204.1 YeeV protein Not tested PAI V 536 Protein 2e-32 64
yeeV YP_854325.1 hypothetical protein Not tested PAI I APEC-O1 Protein 2e-32 64
yeeV AAZ04461.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 1e-31 64
ECO103_3592 YP_003223449.1 hypothetical protein Not tested LEE Protein 8e-32 62
aec76 AAW51759.1 Aec76 Not tested AGI-3 Protein 1e-31 62
ECs4539 NP_312566.1 hypothetical protein Not tested LEE Protein 7e-31 62
unnamed AAC31486.1 L0007 Not tested LEE Protein 5e-31 62
unnamed ACU09433.1 conserved hypothetical protein Not tested LEE Protein 5e-31 62
z5091 CAD33789.1 Z5091 protein Not tested PAI I 536 Protein 2e-31 62
unnamed CAI43848.1 hypothetical protein Not tested LEE Protein 1e-31 62
Z5091 NP_290242.1 hypothetical protein Not tested LEE Protein 7e-31 62
unnamed CAD66207.1 hypothetical protein Not tested PAI III 536 Protein 7e-31 62
unnamed AAL57575.1 unknown Not tested LEE Protein 6e-31 62
unnamed AAK00482.1 unknown Not tested SHI-1 Protein 2e-32 62
yeeV NP_838487.1 hypothetical protein Not tested SHI-1 Protein 3e-32 62
unnamed CAD42101.1 hypothetical protein Not tested PAI II 536 Protein 4e-31 62
yeeV NP_708773.1 hypothetical protein Not tested SHI-1 Protein 3e-32 62
unnamed AAL08478.1 unknown Not tested SRL Protein 3e-30 61
c5149 NP_756997.1 hypothetical protein Not tested PAI II CFT073 Protein 5e-31 61
unnamed AAL67389.1 L0007-like protein Not tested PAI II CFT073 Protein 4e-31 61
yeeV ADD91699.1 YeeV Not tested PAI-I AL862 Protein 7e-31 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ypjF YP_008137221.1 putative toxin YpjF VFG0786 Protein 2e-31 62
ypjF YP_008137221.1 putative toxin YpjF VFG1530 Protein 9e-32 62
ypjF YP_008137221.1 putative toxin YpjF VFG1682 Protein 3e-31 62
ypjF YP_008137221.1 putative toxin YpjF VFG1620 Protein 2e-31 62
ypjF YP_008137221.1 putative toxin YpjF VFG0663 Protein 1e-32 62
ypjF YP_008137221.1 putative toxin YpjF VFG1069 Protein 1e-30 61