Gene Information

Name : yagB (SOD_c10190)
Accession : YP_008137220.1
Strain : Serratia odorifera 4Rx13
Genome accession: NC_021591
Putative virulence/resistance : Virulence
Product : putative protein YagB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1123017 - 1123352 bp
Length : 336 bp
Strand : +
Note : -

DNA sequence :
ATGACATCAATCAATACCCCAGCCTGGGGACTAAAACGCAACGTCACCCCACAATTTGGTGCTCGCCTCGTGCAGCAAGG
TAACCATCTGCACTATCTGGCTGATCGTGCTGGGATCAGCGGTACCTTCAGTGAGGTGCAAACTCGTCATTTGGATGAGG
CTTTTCCGCAGTTTATTAACCATCTCGAACTGATGCTGCTGTCCGGTGAACTCAATCCCCGCTATCAGCACTGCGTCACG
CTTTACTGCAATGGACTGACCTGCGAAGCCGACAGCCTGGGATCATACGGTTATGTGTATCTCGCCATTTATCCTACCCC
CCAATCCACTGCATAA

Protein sequence :
MTSINTPAWGLKRNVTPQFGARLVQQGNHLHYLADRAGISGTFSEVQTRHLDEAFPQFINHLELMLLSGELNPRYQHCVT
LYCNGLTCEADSLGSYGYVYLAIYPTPQSTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yeeU NP_838486.1 structural protein Not tested SHI-1 Protein 5e-31 70
yeeU NP_708772.1 structural protein Not tested SHI-1 Protein 5e-31 70
unnamed AAK00481.1 unknown Not tested SHI-1 Protein 3e-31 70
ECO103_3591 YP_003223448.1 hypothetical protein Not tested LEE Protein 2e-29 70
yeeU CAE85203.1 YeeU protein Not tested PAI V 536 Protein 1e-30 70
yeeU YP_853121.1 antitoxin of the YeeV-YeeU toxin-antitoxin system Virulence PAI IV APEC-O1 Protein 1e-29 69
yeeU AAZ04460.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 1e-30 69
yeeU YP_854324.1 hypothetical protein Not tested PAI I APEC-O1 Protein 2e-30 69
aec75 AAW51758.1 Aec75 Not tested AGI-3 Protein 2e-30 68
unnamed CAD66206.1 hypothetical protein Not tested PAI III 536 Protein 6e-30 68
Z1220 NP_286755.1 structural protein Not tested TAI Protein 3e-30 68
Z1658 NP_287161.1 structural protein Not tested TAI Protein 3e-30 68
yeeU ADD91700.1 YeeU Not tested PAI-I AL862 Protein 2e-29 67
yeeU CAD42100.1 hypothetical protein Not tested PAI II 536 Protein 5e-30 67
c5150 NP_756998.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-29 67
unnamed AAL08477.1 unknown Not tested SRL Protein 4e-30 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yagB YP_008137220.1 putative protein YagB VFG0662 Protein 2e-31 70
yagB YP_008137220.1 putative protein YagB VFG1681 Protein 2e-30 68
yagB YP_008137220.1 putative protein YagB VFG1619 Protein 2e-30 67
yagB YP_008137220.1 putative protein YagB VFG1068 Protein 1e-30 66