Gene Information

Name : int (SOD_c10030)
Accession : YP_008137204.1
Strain : Serratia odorifera 4Rx13
Genome accession: NC_021591
Putative virulence/resistance : Unknown
Product : integrase Int
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1100189 - 1101403 bp
Length : 1215 bp
Strand : +
Note : -

DNA sequence :
ATGGCATTAACCGATGTAAAGGTAAGAAGTGCAAAGCCTACCGATAAGCCTTACAAGCTTACCGATGGCGAAGGAATGCA
TTTAATGGTTCATCCCAATGGATCTAAATACTGGCGCTTGCAGTACCGCTTTGACGGTAAACAAAAGATGCTGGCGTTAG
GTATCTATCCAGAGATTTCGTTATCTGAAGCCAGACAACGCAGAGATGAAGCTAAACGGCAAGTCGCTAACGCTATTGAT
CCCAGTGAACAGAAAAAGGTTGAGAAACAAGCTCGCAAAGCTATGGTAGAAAACACCTTCAAAGCTATCGCTCTGGAGTG
GCATGAGTACAAACGCCCTAACTGGTCGAAGGGTTACGCTGAAGACATTATGGAAGCGTTTGAAAACGATATCTTCCCGG
ATATCGGTAAGCGCCCAATTGCAGAGATAAAGCCACTGGAGATACTCAGCTCGCTGCGTAAACTCGAGAAGCGTGGTGTC
CTCGACAAGCTGCGCAAAATCCGCCAGGCCTGCAACCAGGTATTTCGTTACGCCATTGTTACTGGTCGCGCTGAAACTAA
CCCAGCCTCAGAGCTGGCAAGTGCGTTAACCTCACCAAAATCTGTTCATTACCCTCACCTGTTAGCAGATGACTTTCCTG
CTTTCTTACAAGCTCTTGCTGCTTATTCCGGTAGCCCAATAACCCGGCTAGCGACAAAGATTCTGATGTTAACGGGCGTT
CGTACTATTGAACTGCGTATGGCTGAATGGAAAGAATTTGATTTCGAGAAACGTGTTTGGGAGGTCCCGGTAGAAAGGAT
GAAGATGCGTCGCCCGCATCTGGTGCCTTTATCGGATCAAGTTGTGTCGTCACTTCGTGAGATCCAAGTGGTGACAGGTC
GTTACAACCTGGTTTTCCCTGGGCGTAACGACATCACTAAACCGATGAGTGAAGCGAGTATCAATCAGGTATTAAAAAGG
ATTGGTTATCACGGGAAGGCGACAGGACATGGTTTCCGGCACACGATGAGTACTATTCTGCATGAACAGGGCTATAACAC
GGCATGGATCGAGTTACAGCTTGCCCATGTGGATAAGAACACCATTCGTGGCACGTATAACCATGCACAGTATCTGGAGC
AGCGTAGGGAGATGTTGCAGTGGTATGGGGATTATGTGGACAACCTAGAACTCGGAGGGAAAGTGGCTTGCGCGGAGTTT
GGACGTCGTGCTTAG

Protein sequence :
MALTDVKVRSAKPTDKPYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKMLALGIYPEISLSEARQRRDEAKRQVANAID
PSEQKKVEKQARKAMVENTFKAIALEWHEYKRPNWSKGYAEDIMEAFENDIFPDIGKRPIAEIKPLEILSSLRKLEKRGV
LDKLRKIRQACNQVFRYAIVTGRAETNPASELASALTSPKSVHYPHLLADDFPAFLQALAAYSGSPITRLATKILMLTGV
RTIELRMAEWKEFDFEKRVWEVPVERMKMRRPHLVPLSDQVVSSLREIQVVTGRYNLVFPGRNDITKPMSEASINQVLKR
IGYHGKATGHGFRHTMSTILHEQGYNTAWIELQLAHVDKNTIRGTYNHAQYLEQRREMLQWYGDYVDNLELGGKVACAEF
GRRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 4e-130 62
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-129 62
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-129 62
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-129 62
int ACU09430.1 integrase Not tested LEE Protein 1e-129 62
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-130 62
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-123 61
int AAD44730.1 Int Not tested SHI-2 Protein 7e-129 61
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-129 61
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-128 61
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-128 61
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-128 61
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 4e-78 43
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 4e-77 43
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-77 43
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 4e-78 43
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-77 43
int AAK16198.1 Int Not tested PAI-I AL862 Protein 1e-77 43
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 1e-77 43
int AAL51003.1 CP4-like integrase Not tested LEE Protein 9e-77 43
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-77 43
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-74 42
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 1e-76 42
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 7e-76 42
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 3e-76 42
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 5e-77 42
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 4e-77 42
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 5e-77 42
int AAL51028.1 CP4-like integrase Not tested LEE Protein 4e-77 42
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 4e-77 42
int-phe AAL60261.1 Int-phe Not tested LEE Protein 4e-77 42
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 4e-74 42
int AAK00456.1 Int Not tested SHI-1 Protein 6e-68 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-76 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-76 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
int YP_008137204.1 integrase Int VFG0783 Protein 8e-130 62
int YP_008137204.1 integrase Int VFG0598 Protein 9e-129 61
int YP_008137204.1 integrase Int VFG0626 Protein 2e-78 43
int YP_008137204.1 integrase Int VFG1693 Protein 2e-77 42
int YP_008137204.1 integrase Int VFG1536 Protein 2e-74 42