Gene Information

Name : K756_01275 (K756_01275)
Accession : YP_008123079.1
Strain : Haemophilus parasuis ZJ0906
Genome accession: NC_021521
Putative virulence/resistance : Virulence
Product : chelated iron ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 241604 - 242476 bp
Length : 873 bp
Strand : -
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGCTTGAGTTACTGCTAGAACCTTTTTCCTACGATTATATGTTTAAAGCGATTGTGGTAAGCGGTGCAATCGGGGCGGT
CTGTGCTTTTTTATCTGCCTATTTAATGCTCAAGGGCTGGTCGCTGATTGGAGATGCCTTATCGCACGCCGTTGTTCCTG
GTGTAGCACTGGCTTATGCCTTGTCCTTACCTTATGCCATTGGGGCTTTCTTTTCGGGATTTCTTGCCACTATTGCTATC
TTAGCGGTTAAATCCGTCACAAAATTACGAGAAGATGCGGTAATAGGCTTTATTTTTACCACCTTTTTTGCCTTAGGTTT
ATTGATTATTTCAATCAATCCAACGTCCGTTAATGTGCAATCCATCATTCTCGGTAATATCTTAGGTATTGCCGATGAAG
ATATGCTACAAGTGGTGATTATTTTATCGGTGTCACTCTTTTTTCTAGTGATTTACTGGAAAGATTTATTGCTTGTCTTT
TTTGATGAAATTCAAGCTAAAGCCGTAGGCATTTCGCCGATGCGACTTAAAGTGCTGTTTTTTAGCCTACTCAGTGCTTG
TATCGTTGCAGCATTACAAAGTGTCGGTGCAATTTTAGTGATCGCAATGGTTGTCACCCCAGGGGCAACGGCGTATTTAT
TAACGGATAAATTCGGCAAATTGTTGATTATCGCAATTTCACTGGGCGGTTTTAGTGGATTTTTTGGTGCTTATTTAAGC
TATTTTGCTGATGGGGCAACGGGCGGATTTATTGTCACACTACAAACTCTACTGTTTTTACTGGCGTTTTTCTTCGCTCC
TAAATATGGTTTACTCTCACGCAAATTTGCAAAAAATCCAGCAAAACTGACCGCTTGTCAAGGGGGAGAATAA

Protein sequence : 
MLELLLEPFSYDYMFKAIVVSGAIGAVCAFLSAYLMLKGWSLIGDALSHAVVPGVALAYALSLPYAIGAFFSGFLATIAI
LAVKSVTKLREDAVIGFIFTTFFALGLLIISINPTSVNVQSIILGNILGIADEDMLQVVIILSVSLFFLVIYWKDLLLVF
FDEIQAKAVGISPMRLKVLFFSLLSACIVAALQSVGAILVIAMVVTPGATAYLLTDKFGKLLIIAISLGGFSGFFGAYLS
YFADGATGGFIVTLQTLLFLLAFFFAPKYGLLSRKFAKNPAKLTACQGGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-73 58
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-73 58
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 4e-73 58
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-73 58
sitC NP_461784.1 permease Virulence SPI-1 Protein 5e-73 58
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-42 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-42 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-42 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-42 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-42 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
K756_01275 YP_008123079.1 chelated iron ABC transporter permease BAC0441 Protein 5e-84 72
K756_01275 YP_008123079.1 chelated iron ABC transporter permease BAC0351 Protein 2e-73 58
K756_01275 YP_008123079.1 chelated iron ABC transporter permease BAC0352 Protein 6e-43 43
K756_01275 YP_008123079.1 chelated iron ABC transporter permease BAC0442 Protein 3e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
K756_01275 YP_008123079.1 chelated iron ABC transporter permease VFG0527 Protein 2e-73 58
K756_01275 YP_008123079.1 chelated iron ABC transporter permease VFG0528 Protein 6e-43 43