Gene Information

Name : Lp16_0882 (Lp16_0882)
Accession : YP_008120717.1
Strain : Lactobacillus plantarum 16
Genome accession: NC_021514
Putative virulence/resistance : Virulence
Product : manganese ABC transporter, permease protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 948913 - 949785 bp
Length : 873 bp
Strand : +
Note : -

DNA sequence : 
ATGCAATCAATTACGACCTTTATGGCTGCTTTGGGGAAGTATGATTTCTTACAAAGTGCGCTAATTACGGCTATTATGGT
CGGGGTCATGTCAGGAATTATTGGTAGCTTTATTATTTTACGAGGCATGTCGATGATGGGCGATGCCATCTCGCATGCCG
TTTTACCTGGTGTTGCGGTAGCTTATATGCTCGGTATCAACGTCCTAATTGGTGCTTCGGTTTTTGGAATTCTAGCCGCT
AGCTTGATCGGATTCGTTGCGAGCCGTAGTAAGATTAAGACTGACACCTCAATTGGGATTGTCTTCAGTGCGTTTTACGC
ACTCGGTTTTATCCTAATTTCATTAGCTGAAAGTTCGACGAACTTGCACCACATCTTATTCGGTAACATCCTCGCTGTGA
GTGATACTGATATGATGACGACGACGGTCGTGTTAGGACTAGTGATTTTATTCGTGGTCTTCTTCTACAAGGAATTACTG
ATTACGTCATTTGATCCGACCTTTGCGAAGACTTATGGTCTCAAGGTCCAACTGTTACATTACGCGTTAATGCTGGTCTT
AACGCTAGTGACCGTTTCAGCGCTACAAACCGTCGGGATCATTTTAGTGGTCGCGATGTTGATTACACCGGCTGCGACGT
CCTTTCTATGGACAGAACGACTGGCAGTCATGCTTGGACTGTCAGCCTTAATTGGGGTCTTGTCCTCAGTGGTGGGCTTA
TATCTCAGCTACACGTTGAACTGGGCTTCTGGTCCGGCCATCGTGCTAGTAGCGGCTATTTTCTTCGGTATTTCTTTCAT
CATCTCACCTAAGCAGGCCTTGTTGCCGACGCTTTGGAAAGGGCAAGCAGCAGCGCGACGGGTGACAGCATGA

Protein sequence : 
MQSITTFMAALGKYDFLQSALITAIMVGVMSGIIGSFIILRGMSMMGDAISHAVLPGVAVAYMLGINVLIGASVFGILAA
SLIGFVASRSKIKTDTSIGIVFSAFYALGFILISLAESSTNLHHILFGNILAVSDTDMMTTTVVLGLVILFVVFFYKELL
ITSFDPTFAKTYGLKVQLLHYALMLVLTLVTVSALQTVGIILVVAMLITPAATSFLWTERLAVMLGLSALIGVLSSVVGL
YLSYTLNWASGPAIVLVAAIFFGISFIISPKQALLPTLWKGQAAARRVTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 9e-60 59
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 7e-60 59
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-39 41
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-39 41
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-39 41
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 9e-40 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lp16_0882 YP_008120717.1 manganese ABC transporter, permease protein BAC0442 Protein 5e-42 43
Lp16_0882 YP_008120717.1 manganese ABC transporter, permease protein BAC0352 Protein 6e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lp16_0882 YP_008120717.1 manganese ABC transporter, permease protein VFG0528 Protein 5e-40 41