Gene Information

Name : colR (PP4_08740)
Accession : YP_008111911.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : two-component response regulator ColR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1006263 - 1006946 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCATTCTTTTGGTTGAAGACAACCGCGATATCCTGGCCAACCTGGCCGATTACCTGGGCATGAAGGGCTACACCGT
TGACTGCGCCCAAGATGGCTTGTCCGGCCTGCACCTGGCTGCCACCGAACACTACGACCTGATCGTGCTGGACATCATGC
TGCCCGGCATCGATGGCTACACCCTGTGCAAGCGCCTGCGTGAAGACGCCCGCCGCGACACCCCGGTGATCATGCTTACC
GCCCGCGACCAGTTGGACGACCGACTGCAAGGTTTCCGCTCCGGGGCCGACGACTACCTGCTCAAGCCGTTCGCGCTGTC
GGAGCTTGCGGCGCGCATCGAAGCGGTGCTGCGTCGAGCCCAGGGCGGCGGGCGCCGTACGCTGCAGGTGTCCGACCTCA
GCTACGACCTCGACACCCTGGAGGTTACCCGCCAGGGGCGCCTGCTCAAGCTCAACCCTGTCGGCCTCAAGCTGCTGGCA
GTGTTGATGCAGAAAAGCCCGCACGTGTTGCGCCGCGAAGTGCTGGAAGAAGCCTTGTGGGGCGACGACTGCCCTGACAG
CGACAGCCTGCGCAGCCATGTGCACCAGCTGCGCCAGGTGATCGACAAACCGTTTGAAAAACCGTTGCTGCATACCGTGC
ATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAA

Protein sequence : 
MRILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYTLCKRLREDARRDTPVIMLT
ARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRAQGGGRRTLQVSDLSYDLDTLEVTRQGRLLKLNPVGLKLLA
VLMQKSPHVLRREVLEEALWGDDCPDSDSLRSHVHQLRQVIDKPFEKPLLHTVHGVGYRLAEGRDGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
colR YP_008111911.1 two-component response regulator ColR BAC0197 Protein 3e-35 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
colR YP_008111911.1 two-component response regulator ColR VFG0596 Protein 1e-33 42
colR YP_008111911.1 two-component response regulator ColR VFG1390 Protein 3e-31 41