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Name : xcpR (PP4_42690) Accession : YP_008115306.1 Strain : Pseudomonas putida NBRC 14164 Genome accession: NC_021505 Putative virulence/resistance : Virulence Product : type II secretion system protein XcpR Function : - COG functional category : - COG ID : - EC number : - Position : 4835348 - 4836796 bp Length : 1449 bp Strand : - Note : - DNA sequence : ATGTTGCCGTATCGCCAGGCACGCCAGAGCGGGGTGGCCATGACCACGACGGAACAGGGCTGGCAGCTGTGGCTGCGGCC CGACGCCGACAGTGCCCAGTTGCAGGAACTGCTGCGGGTACATGGCCAGCCCTGCATGCTCGAATACCTGGAGCCTGCCG TGTTCGACGAGCGCCTCGGCCAGCTGTACCAGGCCGGCGATGGCGCCAATCAAGCGCTGATCGAAGGCATCGGCGACCAG GTCGACCTGGACAGCCTGATGAGCGAGATGCCGCAGGTCGAAGACCTGCTGGAAAGCGATGACGAAGCCCCGGTAATTCG CCTGATCAACGGCCTGTTCGGCCAGGCGCTGCGCCTGCGCGCCTCGGACATCCATATCGAAACCTTCGAGCAAAGCCTGG TGGTGCGCCTGCGCGTCGATGGCCACCTGCGCGAAGTGCTACGCCCGCCGCGTGCGCTGTCGGCCATGCTGGTGTCGCGG ATCAAGGTCATGGCACGGCTGGATATTGCCGAGAAGCGCCAGCCCCAGGACGGCCGTATTACCCTGCGCGCGGCAGGGCG CGAGGTGGATGTGCGGGTTTCGACCCTGCCCGGCATCCATGGCGAGCGCGTGGTCATGCGTGTGCTCGACAAGCAGGCCA GCTTGCTCGCGCTGGGCAACCTGGGCATGCCGCCCGCGGTGTTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGT ATCGTGCTGTCCACCGGCCCGACCGGTTCGGGCAAGACCACCACCCTGTACGCCAGCCTCAACAGCCTCAACGATGGCAG CCGCAACATTCTCACCGTCGAGGATCCGGTGGAATACGCCATCGCCGGCATCGGCCAGACCGCCATCAACCCGCGTGCGG GGCTGACGTTCGCCAGTGGCTTGCGCGCCATCCTGCGTCAGGACCCGGACGTGATCATGCTCGGCGAAATCCGTGACCAG GAAACCGCGCAAATAGCCGTGCAGGCCAGCCTGACCGGCCACCTGGTGCTGTCCACCCTGCACACCAACAGTGCCGTGGG TGCGGTGACCCGCCTGCGCGACATGGGTATCGAGCCGTTTCTGATTGCCTCGTGCCTGCGCGGTGTGCTGGCCCAGCGGC TGGTGCGGCGTCTGTGCAGTTGCGCCGTGGCGCACCCGCTGCAAGCTGCCGAGCGTGACCTGTGGCCAGAACTGACGTCG CTGGGCAGCAGCTACCACGCGGTGGGCTGCGAGCAGTGCCAGGGCAGCGGCTATGCCGGGCGCCTGGGCCTGTACGAATT CATCGAACTGGATGCCGGGCTGATCGGCCTGCTGTATGACGGCGCCAGTGAACTGGCCATGCAGGAGTACCTGGCCGGGC GCCGGCAGAGCCTGGTCGCAATGGCCAGCGACTGCCTGGCCCGTGGCGAGACCAGCCTGGCCGAAGTACTGCGTGTGGTG CAGGGCTAA Protein sequence : MLPYRQARQSGVAMTTTEQGWQLWLRPDADSAQLQELLRVHGQPCMLEYLEPAVFDERLGQLYQAGDGANQALIEGIGDQ VDLDSLMSEMPQVEDLLESDDEAPVIRLINGLFGQALRLRASDIHIETFEQSLVVRLRVDGHLREVLRPPRALSAMLVSR IKVMARLDIAEKRQPQDGRITLRAAGREVDVRVSTLPGIHGERVVMRVLDKQASLLALGNLGMPPAVLQGLRSCLARPNG IVLSTGPTGSGKTTTLYASLNSLNDGSRNILTVEDPVEYAIAGIGQTAINPRAGLTFASGLRAILRQDPDVIMLGEIRDQ ETAQIAVQASLTGHLVLSTLHTNSAVGAVTRLRDMGIEPFLIASCLRGVLAQRLVRRLCSCAVAHPLQAAERDLWPELTS LGSSYHAVGCEQCQGSGYAGRLGLYEFIELDAGLIGLLYDGASELAMQEYLAGRRQSLVAMASDCLARGETSLAEVLRVV QG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 7e-107 | 57 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-107 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| xcpR | YP_008115306.1 | type II secretion system protein XcpR | VFG2048 | Protein | 5e-106 | 56 |
| xcpR | YP_008115306.1 | type II secretion system protein XcpR | VFG0182 | Protein | 2e-105 | 55 |
| xcpR | YP_008115306.1 | type II secretion system protein XcpR | VFG1876 | Protein | 5e-110 | 50 |
| xcpR | YP_008115306.1 | type II secretion system protein XcpR | VFG2426 | Protein | 2e-65 | 48 |
| xcpR | YP_008115306.1 | type II secretion system protein XcpR | VFG1880 | Protein | 5e-69 | 46 |
| xcpR | YP_008115306.1 | type II secretion system protein XcpR | VFG0112 | Protein | 6e-71 | 41 |
