Gene Information

Name : xcpT (PP4_42670)
Accession : YP_008115304.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : type II secretion system protein XcpT
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4833690 - 4834124 bp
Length : 435 bp
Strand : -
Note : -

DNA sequence : 
ATGCAGCATCAACGTAACCGCCAGCGCGGTTTCACCCTCATGGAAATCATGGTGGTGATCTTCATCATCGGCCTGCTGAT
CGCCGTGGTCGCGCCCAGCGTGCTGGGCAACCAGGACAAGGCCATGAAGCAGAAGGTGATGGCCGACCTGGCCACCCTGG
AGCAGGCGCTGGACATGTACCGCCTGGACAACCTGCGCTTTCCCAGCACTGAACAGGGCCTGGCCGCGCTGGTGAAAAAG
CCGAGCCAGGAACCGCTGCCGCGGGCCTGGCGCAGTGACGGCTATGTGCGCCGCCTGCCGGAAGACCCATGGGGCACCCC
GTACCAGTACCGCATGCCCGGTGAGCATGGCCGGGTGGATGTGTATTCGCTGGGTGCCGATGGCCAGCCGGGCGGTGAAG
GCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAA

Protein sequence : 
MQHQRNRQRGFTLMEIMVVIFIIGLLIAVVAPSVLGNQDKAMKQKVMADLATLEQALDMYRLDNLRFPSTEQGLAALVKK
PSQEPLPRAWRSDGYVRRLPEDPWGTPYQYRMPGEHGRVDVYSLGADGQPGGEGQDADLGNWAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspG YP_854404.1 type II secretion protein GspG Not tested PAI I APEC-O1 Protein 3e-38 55
gspG CAE85231.1 GspG, hypothetical type II secretion protein Not tested PAI V 536 Protein 2e-38 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
xcpT YP_008115304.1 type II secretion system protein XcpT VFG2050 Protein 8e-39 55
xcpT YP_008115304.1 type II secretion system protein XcpT VFG0180 Protein 2e-37 55
xcpT YP_008115304.1 type II secretion system protein XcpT VFG1871 Protein 1e-34 50