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Name : wbpM (PP4_39810) Accession : YP_008115018.1 Strain : Pseudomonas putida NBRC 14164 Genome accession: NC_021505 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein WbpM Function : - COG functional category : - COG ID : - EC number : - Position : 4528254 - 4530251 bp Length : 1998 bp Strand : - Note : - DNA sequence : ATGGATAAGCTGCGCTCAAGACTGCTTGGACTACCTCGACGCCACAAACGGCTGATTCAGGTAGCGGCTGATGTGATTCT GGTCTGGTTCGCGCTGTGGCTGGCGTTTGTCGTGCGCCTGGGCATCGACGATCTGGCCAACCCTGTTGTGGACCACACCT GGTTGTTCATCACCGCGCCGATCATCTCGATCCCGTTGTTCATCCGCTTTGGCCTGTATCGGGCAGTCATGCGCTATTTC GGCAATGACGCACTGATCGCCATCATCAAGGCCGTGACACTGTCGGCGCTGATCCTGGGCTTCATCATCTACTGGGCCAG CAACCATCAAAACGTGGTGCCACGCTCGATCACCTTCAATTACTGGTGGCTGAGCCTGATCATGGTCGGCGGCCTGCGCC TGGCCATGCGCCAGTACTTCCTCGGTGACTGGTTCGCCACCGCCGTACAGCATGTGCCCTTTGCCAACCGCAACGATGGC CTGCCACGGGTTGCCATCTACGGCGCCGGCTCGGCCGGTAACCAGCTGGTTGCGGCCCTGCGCATGGGCAAGGCCATGCG CCCGGTAGCGTTCATCGACGACGATGGCAGCATCACCGACCGGGTGATCGCCGGCCTGCAGGTGTACCAGCCAGAACAAC TGCAACGCATGATCGACGACACCGGCGCCGAAGAAATCCTGCTGGCGCTGCCCTCGGTCAGCCGCAGCCGCCGCCGCGAA ATCCTCAACCTGCTCGAAGGCTACCCGCTGCACGTACGCAGTGTGCCCGGTTTCATGGACCTGGCCAGCGGCCGGGTCAA GGTGGACGATATCCAGGAAGTGGACATCGCCGACCTACTGGGGCGCGACGCGGTGCCTGCACAAGGTGACCTGCTGCAGC ACTGCATCATCGACCAGACCGTAATGGTGACCGGTGCCGGTGGCTCGATCGGCTCCGAGCTGTGCCGCCAGATCCTGGGG CAGACGCCGCGTACCCTGCTGCTGTTCGAACACAGTGAATTCAACCTGTACACCATCGCTGGCGAGCTGGAGCAGCGCAT CCTGCGCGAAGGGCTGGCCGTGCAGTTGATCCCGATACTGGGCTCGGTCCGCGACCAGGCCAAGATGCTCGACGTGATGC GCGCCTGGCAGGTAGACACCGTCTACCACGCCGCTGCGTACAAGCATGTGCCCATTGTCGAGCACAACATTGCCGAAGGC CTGTCGAACAATGTGTTCGGCACTCTGTACACCGCCCAGGCGGCGCTGCAGGCTGGCGTGTCGAACTTCGTGCTCATTTC CACCGACAAGGCCGTACGCCCCACCAATGTGATGGGCAGCACCAAGCGCCTGGCCGAAATGGTGCTGCAGGCCCTGAGCA ACGAGCTGGCCCCGGTACTGATGGGCGATACCGGCAATGTGTCGCAGGTGAACAAGACCCGTTTCACCATGGTGCGTTTC GGCAATGTGCTGGGCTCTTCCGGCTCGGTCATTCCGTTGTTCCACAAACAGATCAAGAACGGCGGGCCGCTGACGGTGAC CCACCCGAAAATCACCCGCTACTTCATGACCATCCCCGAGGCTGCGCAACTGGTGATCCAGGCCGGCTCCATGGGGCAGG GCGGCGACGTGTTCGTGCTGGACATGGGCGAGCCGGTGAAAATCGTGGAACTGGCCGAAAAGATGATTCACCTGTCCGGC TTCAGCATCCGCTCCGAGCGCAACCCGCTGGGCGACATCGCCATCAACTTCACCGGCCTGCGCCCCGGCGAGAAACTGTA CGAAGAATTGTTGATCGGCGACAACGTGATTGCCACGCGCCACCCCATGATCATGAGCGCCAACGAAGACTACCTGACCT GGGATGTGCTGAAGCAGCGCCTGGATGCACTGCGTACCGCGACCGCGGCCGACGACTTTGCCACCGTGCGCCAGCTGCTG CGCGACACCGTAAGCGGCTATGTGCCGGGCGGTGAAATTGTTGACTGGTTGTACCAGCGGCGGCGCCTGGAGCCCTGA Protein sequence : MDKLRSRLLGLPRRHKRLIQVAADVILVWFALWLAFVVRLGIDDLANPVVDHTWLFITAPIISIPLFIRFGLYRAVMRYF GNDALIAIIKAVTLSALILGFIIYWASNHQNVVPRSITFNYWWLSLIMVGGLRLAMRQYFLGDWFATAVQHVPFANRNDG LPRVAIYGAGSAGNQLVAALRMGKAMRPVAFIDDDGSITDRVIAGLQVYQPEQLQRMIDDTGAEEILLALPSVSRSRRRE ILNLLEGYPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDAVPAQGDLLQHCIIDQTVMVTGAGGSIGSELCRQILG QTPRTLLLFEHSEFNLYTIAGELEQRILREGLAVQLIPILGSVRDQAKMLDVMRAWQVDTVYHAAAYKHVPIVEHNIAEG LSNNVFGTLYTAQAALQAGVSNFVLISTDKAVRPTNVMGSTKRLAEMVLQALSNELAPVLMGDTGNVSQVNKTRFTMVRF GNVLGSSGSVIPLFHKQIKNGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGQGGDVFVLDMGEPVKIVELAEKMIHLSG FSIRSERNPLGDIAINFTGLRPGEKLYEELLIGDNVIATRHPMIMSANEDYLTWDVLKQRLDALRTATAADDFATVRQLL RDTVSGYVPGGEIVDWLYQRRRLEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-80 | 43 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 8e-79 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| wbpM | YP_008115018.1 | polysaccharide biosynthesis protein WbpM | VFG0029 | Protein | 7e-121 | 47 |
| wbpM | YP_008115018.1 | polysaccharide biosynthesis protein WbpM | VFG1300 | Protein | 2e-77 | 43 |
