Gene Information

Name : copR (PP4_36900)
Accession : YP_008114727.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : two-component response regulator CopR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4193244 - 4193924 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACTGCTGATCGTCGAAGACCAGGCCCGCACCGGCCAGTACCTGAGCCAGGGCTTGAGCGAGGCCGGCTTCGCCAC
CGAGCTGGCCACCGATGGCGAAACCGGCCAGTTACTGGCCCTGACCGGCGACCACGACCTGCTGATCCTCGACGTAATGT
TGCCTGGCCGTGACGGCTGGCAGATCCTCCAGGCCGTGCGCCAGGCCGGCCTGGATACGCCAGTGCTGTTCCTCACCGCC
CGCGATGCCGTCGAGGACCGCGTGCATGGCCTGGAGCTGGGCGCCGACGACTATCTGGTCAAGCCGTTCGCCTTTTCCGA
ACTGCTGGCCCGGGTGCGCAGCCTGCTGCGCCGTGGCACCAGCCCCAGCCAGGACACCACCCTGAACCTGGCCGACCTGC
GCCTGGACCTGATCCGCCGCCGCGCCGAGCGCGCCGGCCAGCGCATCGACCTGACCGCCAAGGAGTTCGCCCTGCTCGAA
CTGCTGCTGCGCCGCCAGGGCGAGGTATTGCCAAAATCGCTGATCGCATCGCAGGTGTGGGACATGAATTTCGACAGCGA
CACCAACGTGATCGAAGTGGCGATCCGCCGCCTGCGCCTGAAAATCGACGACCCGCACCCGAACAAGCTGATCCACACCG
TACGTGGCATGGGCTATGTGCTCGAAGAGCGCACGGAATGA

Protein sequence : 
MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQLLALTGDHDLLILDVMLPGRDGWQILQAVRQAGLDTPVLFLTA
RDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGTSPSQDTTLNLADLRLDLIRRRAERAGQRIDLTAKEFALLE
LLLRRQGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLEERTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-50 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-49 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_008114727.1 two-component response regulator CopR BAC0638 Protein 8e-58 70
copR YP_008114727.1 two-component response regulator CopR BAC0083 Protein 2e-63 69
copR YP_008114727.1 two-component response regulator CopR BAC0197 Protein 5e-59 66
copR YP_008114727.1 two-component response regulator CopR BAC0111 Protein 8e-62 63
copR YP_008114727.1 two-component response regulator CopR BAC0308 Protein 1e-59 62
copR YP_008114727.1 two-component response regulator CopR BAC0125 Protein 1e-57 60
copR YP_008114727.1 two-component response regulator CopR BAC0347 Protein 6e-55 59
copR YP_008114727.1 two-component response regulator CopR NC_002516.2.879194.p Protein 3e-27 41
copR YP_008114727.1 two-component response regulator CopR HE999704.1.gene1528. Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_008114727.1 two-component response regulator CopR VFG0596 Protein 3e-50 54
copR YP_008114727.1 two-component response regulator CopR VFG1390 Protein 1e-34 44
copR YP_008114727.1 two-component response regulator CopR VFG1389 Protein 5e-30 43