Gene Information

Name : pedI (PP4_31580)
Accession : YP_008114195.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase PedI
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3588597 - 3590117 bp
Length : 1521 bp
Strand : -
Note : -

DNA sequence : 
ATGATCTACGCACAACCCGGAACCCCAGGCGCCGTCGTATCCTTCAAGCCACGTTATGGCAACTTCATCAATGGCGAGTT
CGTGCAACCGTTGGCTGGCCAGTACTTCACCAACAGCTCGCCGGTCAATGGCCAGCCGATTGCCGAATTCCCGCGTTCCA
CTGCCCAGGACGTCGACCGCGCCCTGGACGCCGCACACGCAGCCGCCGAAGCCTGGGGCAAGACCTCGGTGCAAGACCGC
GCCCTGCTGCTACTGAAGATTGCCGACCGTATCGAACAGAACCTGGAAGTGCTGGCCGTCACCGAAAGCTGGGACAACGG
CAAGGCGGTGCGCGAAACGCTTAATGCCGATGTGCCGCTGGCAGCGGACCACTTCCGCTATTTTGCCGGTTGCATCCGTG
CCCAGGAGGGCGGCGCGGCCGAAATCAACGAAGGCACCGTGGCTTATCACATCCATGAGCCGCTGGGCGTGGTCGGGCAG
ATCATCCCCTGGAACTTCCCGTTGCTGATGGCCGCCTGGAAGCTTGCCCCGGCCCTGGCCGCCGGCAACTGTGTAGTGCT
CAAGCCGGCCGAGCAGACGCCACTGTCGATCACCATTTTTGCCGAGCTGGTCGCCGACCTGCTGCCGGCGGGCGTGTTGA
ACATCGTCCAGGGCTTTGGCCGTGAGGCCGGCGAGGCGTTGGCCACCAGCAAGCGCATCGCCAAGATCGCCTTCACCGGC
TCCACCCCGGTGGGTTCGCACATCATAAAATGCGCGGCCGAGAACATCATCCCGTCCACCGTCGAACTGGGCGGCAAGTC
GCCGAATATCTTCTTCGAAGACATCATGCAGGCCGAGCCCGCGTTCATCGAGAAGGCCGCCGAGGGCCTGGTGCTGGCGT
TCTTCAACCAGGGCGAGGTGTGCACCTGTCCGTCAAGGGCACTGATCCAGGAATCGATCTACGAGCCATTCATGGCCGAG
GTGATGAAGAAGATCGCCAAGATAACGCGGGGCAACCCGCTGGACACCGATACCATGGTTGGCGCCCAGGCTTCGGAGCA
GCAATACGACAAGATTCTGTCCTATCTGCAGATTGCCAAGGAGGAGGGCGCGCAGCTGCTCACCGGCGGCGGTGCCGAGC
GGCTGCAGGGCGACCTGGGCAGCGGTTACTACATCCAGCCGACCCTGCTCAAAGGCAACAACACGATGCGTGTGTTCCAG
GAAGAAATCTTCGGCCCGGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATTGCCAACGACACGGA
GTTTGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCCTACCGGATGGGCCGCGGCATCAAGGCCGGCCGCG
TGTGGACCAACTGCTACCACCTGTACCCGGCCCATGCAGCGTTTGGCGGCTACAAGAAGTCTGGCGTGGGCCGTGAGACC
CACAAGATGATGCTCGACCACTACCAGCAGACCAAGAACCTGTTGGTAAGCTACGACATCAACCCGCTGGGCTTCTTCTA
G

Protein sequence : 
MIYAQPGTPGAVVSFKPRYGNFINGEFVQPLAGQYFTNSSPVNGQPIAEFPRSTAQDVDRALDAAHAAAEAWGKTSVQDR
ALLLLKIADRIEQNLEVLAVTESWDNGKAVRETLNADVPLAADHFRYFAGCIRAQEGGAAEINEGTVAYHIHEPLGVVGQ
IIPWNFPLLMAAWKLAPALAAGNCVVLKPAEQTPLSITIFAELVADLLPAGVLNIVQGFGREAGEALATSKRIAKIAFTG
STPVGSHIIKCAAENIIPSTVELGGKSPNIFFEDIMQAEPAFIEKAAEGLVLAFFNQGEVCTCPSRALIQESIYEPFMAE
VMKKIAKITRGNPLDTDTMVGAQASEQQYDKILSYLQIAKEEGAQLLTGGGAERLQGDLGSGYYIQPTLLKGNNTMRVFQ
EEIFGPVVGVTTFKDEAEALAIANDTEFGLGAGLWTRDINRAYRMGRGIKAGRVWTNCYHLYPAHAAFGGYKKSGVGRET
HKMMLDHYQQTKNLLVSYDINPLGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-149 66
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 3e-156 65
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 3e-156 65
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 3e-156 65
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-155 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pedI YP_008114195.1 aldehyde dehydrogenase PedI VFG0082 Protein 9e-150 66