Gene Information

Name : intB (PP4_03000)
Accession : YP_008111337.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Unknown
Product : putative prophage P4 integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 350726 - 352045 bp
Length : 1320 bp
Strand : -
Note : -

DNA sequence :
ATGGCCCGCACCACTGCCCCGCTTACAGACACCGCCTGTCGCACGGCAAAGCCCAGAGAGCGCGAGTACAAGCTCTTCGA
CGGCGACGGTCTCTACCTCCTTGTGCAACCCAACGGCCGCAAAGGCTGGCGGCTCAGGTACGTGAAACCCGATGGCCGCG
AAGGCCTGACCGCCCTCGGCAGCTACCCGGTGGTCGGGCTGGGCGACGCACGCCGCAAGCGCTTCGAGATCAAGCAGCAG
CTCGCCAACGGCATAGACCCCATCCAGTACAAGCAACAAACCAAGACTCAGGCCGTGATCAACGGCCGGACCTTCGAAAG
CGTTGCGCTCGACTGGTATGCGAGCATGGTGCCGAAGTGGGCGCCCGGCCACGCCAAGACTGTGCTCAGCCGATTGAAGA
CCCACGTGTTCCCTTTGATCGGTGCCAGAGCAATTGTTGAGCTGGACACCCACGACCTCATGCAGCCACTGGAAGCCGTG
ACGAAGCGCGGCACCATCGACGTGGCGCTCAGGATCAAGAACTACCTGCAAAGCATCATGCGTGAAGCCAAACGGCTGCG
ACTGATCACGGCGAACCCGGCTCACGACCTCGATGGCTCGATCAAGACACCACGGGTAACTCACCGACCCGCACTACCCT
TATCGCGGCTGCCAGGGCTACTGGCATGCATTGAGGACTACAGAGGTCGCCCGCTCACGCGCCTCACGGTGATGCTGTCG
TTGCATGTATTCGTACGCTCAAGTGAACTGCGCTTCGCTCGTTGGAATGAGTTCGACCTCAAGCGTGGAATTTGGGAGAT
CCCCGACACCCGCCCGGCGCTGGACGGAGTGCCCTTTTCCACAAGGGGTACGAAGATGGCCGGGGACATTCACGTTGTAC
CCTTATCGCCGCAAGCCGTGGCCTTGCTCGAGCAGATCCACGCGATCACCGGCAAATTTGAGCTGGTGTTCGCTGGCGAT
GCCAAGCCATGGAAACCGATGTCCGAGAACACGGTGAATGCCGCGCTCAGGACGATGGGCTACGACACCAAGGTGGATAT
TTGCGGCCACGGGTTCCGAGCCATGGCGTGCAGTGCGCTGGTCGAGTCCGGGCTGTGGTCAGAGACGGCCATCGAACGGC
AGATGAGCCACAAGGAACGCAACAACGTGCGGGCCGCTTATACCCACAAGGCCGAGTTCCTCGAAGAGCGCCGGATGATC
ATGACCTGGTGGAGCCGGTTTCTGGAGGCGAACCGCGAGGACCATGTGACGCCGCATGAGTTTGCCAAACAGACGGGCGA
GAACGTAACGCGCCTTCGCAGTGCCAAAAGGACCGAGTAA

Protein sequence :
MARTTAPLTDTACRTAKPREREYKLFDGDGLYLLVQPNGRKGWRLRYVKPDGREGLTALGSYPVVGLGDARRKRFEIKQQ
LANGIDPIQYKQQTKTQAVINGRTFESVALDWYASMVPKWAPGHAKTVLSRLKTHVFPLIGARAIVELDTHDLMQPLEAV
TKRGTIDVALRIKNYLQSIMREAKRLRLITANPAHDLDGSIKTPRVTHRPALPLSRLPGLLACIEDYRGRPLTRLTVMLS
LHVFVRSSELRFARWNEFDLKRGIWEIPDTRPALDGVPFSTRGTKMAGDIHVVPLSPQAVALLEQIHAITGKFELVFAGD
AKPWKPMSENTVNAALRTMGYDTKVDICGHGFRAMACSALVESGLWSETAIERQMSHKERNNVRAAYTHKAEFLEERRMI
MTWWSRFLEANREDHVTPHEFAKQTGENVTRLRSAKRTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 0.0 95
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 4e-104 53
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 4e-104 53
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-102 53
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 3e-99 53
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 3e-99 53
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-102 53
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-102 53
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-103 53
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-103 53
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 4e-103 53
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-103 53
int AAK16198.1 Int Not tested PAI-I AL862 Protein 4e-103 53
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 4e-103 53
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-102 53
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-102 53
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 2e-70 52
int AAK00456.1 Int Not tested SHI-1 Protein 2e-96 52
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 2e-97 52
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 7e-103 52
int CAC81896.1 integrase Not tested LEE II Protein 2e-95 52
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-102 52
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-102 52
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-101 52
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 3e-102 52
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-102 52
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-102 52
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-102 52
int CAA08754.1 integrase Not tested HPI Protein 5e-95 51
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 4e-81 51
int2 NP_993013.1 integrase Not tested HPI Protein 2e-94 50
int CAB59974.1 integrase Not tested HPI Protein 4e-95 50
int CAA21384.1 - Not tested HPI Protein 2e-94 50
int YP_002346908.1 integrase Not tested HPI Protein 2e-94 50
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 2e-94 50
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-93 50
unnamed AAD17660.1 unknown Not tested HPI Protein 6e-92 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intB YP_008111337.1 putative prophage P4 integrase VFG0626 Protein 1e-103 53
intB YP_008111337.1 putative prophage P4 integrase VFG1693 Protein 1e-103 53
intB YP_008111337.1 putative prophage P4 integrase VFG1536 Protein 1e-97 52