Gene Information

Name : PP4_30050 (PP4_30050)
Accession : YP_008114042.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3410062 - 3411534 bp
Length : 1473 bp
Strand : -
Note : -

DNA sequence :
ATGAACCAAGCCGTGAGTGAACGGCCGCTTGCCCCGCAATTGCCATTGGACGTGCAGGGCATTGCTGTCGCCTCCACGAG
CCTCGACAACGTGTTCAATGGCAAGCGCATCCCCTGCAGCGACGGAGGGGTCATCTTCGGCCGGCTGCATCTGCCGGAGT
ATCAGCGTCCCTACCGCTGGAGCGAGGAGCAACTTGGGCGGCTGCTCGACGATTTGCGCAGCTTCTTTAGCAGCGATGCG
CCTACGCATGATTTCTACCTGGGTAGCATCATTTTGCACCAGGAAGGGGGCGACGGACGCCAGCGCGGTCTGCTCAATAT
CATCGACGGACAGCAGCGAATCACCAGCCTGGCCTTGTTGCATTACCTTCAGCACGGCGAGAAGGGCTCGCCTGAGCTGA
AGTTCAACGCGCCGGAGAGCCACCGACGCATCCAGTTGAATCTTCGTTGGCTGGAGCAGCAACGCCTGCCGCGGATCGAC
TTCACCCGTATCAACGTGACCCTGGTCGTGACTCGACGTGAGGACGACGCCTACCGCTTCTTCGAAACCCAGAACACCTC
GGGCGTGCGCCTGGGCGGCGCCGACATCGTCAAGGCTTATCACCTGCGCAGTGTTGCCGCCGCAATGCAAGACGATTTCG
CCCGGACCTGGGAGTCGCTCGGCGACCTCAAGCCGTTGGTCGCGTCCTTCATGAAGTCTCGGCACTGGCAAAGTTTGTGT
TGGCGCAACGTCGCCAGTGATCGGGATCCGCTGCAAGAGCGCAAGCAGATCGTCACTGAGCTTGCCGAACGCACGCTCCC
CGGTATCGGCGACATCGCTTATCGGTCTCTGCAAGTTCACCGTGATGCCTGGGGCAAGGAAACACAGGTTGTCCAGCCGG
GCTATGCCATGCGCCAGCCTCTGGGCACCGGGGTCAATACCATGCGTGTTGTGACCTACTTCCAAGGCTTGCGCAAGACC
TTGCTCGAGGTCGACAAGACGGCCAAGAAACCCACGTTTTCCTACTACTACAAGCGCTTGGTCCATGACGCGTGCGGCAG
CGTGTTTCTCAGCCGTGCTTTTGATTGTGCGCTGCTGATGTACGCCAGCCAGTTCGGGACTTCCCGTTTGCTTGAAGCCA
GCCTGTGGATGTTCCGGATGATCTTCTCCTATCGCCTGATCAAGGACGTCAGCGTCCGGGAAGATGGCGTGCAGGCGCAT
CTTAGGGACAACTCGTTGCTGGACTGGATTGCCAGTGCCCACACCCACGAAGAGCTGTTGAATTACTTACGTGACTACAC
CTATACGGTCAGTGCTGAACAACTGGACAAGAGCAGCATCAAGAAGCGCTTCGTGGAGTCGGTAGACTCGACGCTCAACC
TGCATCTGCGCTGGCCTGACCCGCAGCGGGTGGCTGGTGAATATGACGCGCAGTTGCGCAGTGCCATCGAACGCATCAGC
TGCGATAGACTCGCCTGCCAAGGAGGCAAGTAA

Protein sequence :
MNQAVSERPLAPQLPLDVQGIAVASTSLDNVFNGKRIPCSDGGVIFGRLHLPEYQRPYRWSEEQLGRLLDDLRSFFSSDA
PTHDFYLGSIILHQEGGDGRQRGLLNIIDGQQRITSLALLHYLQHGEKGSPELKFNAPESHRRIQLNLRWLEQQRLPRID
FTRINVTLVVTRREDDAYRFFETQNTSGVRLGGADIVKAYHLRSVAAAMQDDFARTWESLGDLKPLVASFMKSRHWQSLC
WRNVASDRDPLQERKQIVTELAERTLPGIGDIAYRSLQVHRDAWGKETQVVQPGYAMRQPLGTGVNTMRVVTYFQGLRKT
LLEVDKTAKKPTFSYYYKRLVHDACGSVFLSRAFDCALLMYASQFGTSRLLEASLWMFRMIFSYRLIKDVSVREDGVQAH
LRDNSLLDWIASAHTHEELLNYLRDYTYTVSAEQLDKSSIKKRFVESVDSTLNLHLRWPDPQRVAGEYDAQLRSAIERIS
CDRLACQGGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1767 NP_231402.1 hypothetical protein Not tested VPI-2 Protein 1e-75 42
VC0395_A1365 YP_001217308.1 hypothetical protein Not tested VPI-2 Protein 1e-75 42
VPI2_0015c ACA01832.1 hypothetical protein Not tested VPI-2 Protein 6e-76 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP4_30050 YP_008114042.1 hypothetical protein VFG1100 Protein 5e-76 42