Gene Information

Name : PP4_29120 (PP4_29120)
Accession : YP_008113949.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : putative two-component response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3309806 - 3310486 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence : 
ATGCCTCGCGTACTGACCATCGAAGACGACGCCGTCACCGGCCAGGAAATCGTCGCCGAACTTACCAGCCACGGCCTGGA
GGTCGAATGGGCCGACAACGGCCGTGAAGGCCTGGCCAAGGCCATTGCCGGTGGCTACGACCTGATCACCCTGGACCGCA
TGCTGCCCGAGGTCGATGGCCTGACCATCGTCACCACCCTGCGCAGCCTCAAGATCGCCACGCCGATCCTGATGATCAGC
GCCCTCTCCGACGTCGACGAACGGGTACGCGGCCTGCGGGCCGGCGGTGACGACTACCTGACCAAGCCGTTTGCCTCCGA
CGAAATGGCCGCACGGGTCGAGGTATTGCTGCGCCGCAACAGTGTGCCCATGACCCAGACACGCCTGCAGGTCGCCGACC
TGCAACTGGACCTGATCAGCCACGAGGCGCGCCGCGGTGACAATACGCTCAACCTGCTGCCCACCGAATACAAACTGCTG
GAGTACCTGATGCGCCACAGCGGCCAGGTGATCACACGGATGATGATTTTCGAAGAAGTCTGGGGCTACCATTTCGACCC
CGGCACAAACCTGATCGACGTGCACATCGGTCGCCTGCGCAAGAAAATCGACTCCCCCGGCCAGTCGCCGCTGATCCGTA
CGGTACGGGGCTCCGGCTATGCCATTGCTGAACCCGTCTAA

Protein sequence : 
MPRVLTIEDDAVTGQEIVAELTSHGLEVEWADNGREGLAKAIAGGYDLITLDRMLPEVDGLTIVTTLRSLKIATPILMIS
ALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPMTQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLL
EYLMRHSGQVITRMMIFEEVWGYHFDPGTNLIDVHIGRLRKKIDSPGQSPLIRTVRGSGYAIAEPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP4_29120 YP_008113949.1 putative two-component response regulator BAC0111 Protein 2e-46 46
PP4_29120 YP_008113949.1 putative two-component response regulator BAC0347 Protein 7e-42 45
PP4_29120 YP_008113949.1 putative two-component response regulator BAC0125 Protein 1e-40 44
PP4_29120 YP_008113949.1 putative two-component response regulator BAC0197 Protein 4e-38 43
PP4_29120 YP_008113949.1 putative two-component response regulator BAC0083 Protein 6e-41 42
PP4_29120 YP_008113949.1 putative two-component response regulator BAC0308 Protein 7e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP4_29120 YP_008113949.1 putative two-component response regulator VFG1389 Protein 2e-32 41