Gene Information

Name : PP4_23370 (PP4_23370)
Accession : YP_008113374.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : putative transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2662142 - 2663467 bp
Length : 1326 bp
Strand : +
Note : -

DNA sequence : 
ATGCTGCAGCCTGCCGCCCAACGTCGTTTGCTCATCGTCGACCCCTGCGACGACTGCCACCAATTGTTGCCAGGCCTGAG
TAGCGCAGGCTGGGATGTGGACAGTTGCGTGCTCGGTGCCGCGCTCGATCACCCTTGTGATGTCGGCTTGTTGCGCTTGC
AGGCTTCGCACCTTAGGCACCCGGACGCGGTCAAGGACATGATCAAGCGCAGTAACACCGAATGGATCGCGGTGTTAAGC
GCCGAACAGTTGCGCATGCCGGCCGTCGGCGATTTTGTCTGCGAATGGTTCTTCGACTTCCACACCCTGCCATTCGATGT
CTCCCGCGTGCAGGTCACCCTTGGCCGGGCGTTCGGCATGGCGCGCCTGCGGGGCAAAGGGGCCGCCAAGGTGGACGACG
CCACCCACGAACTGCTTGGCGAAAGCCGGCCGATCCGCGAGTTGCGCAAGTTGCTGGGCAAGTTGGCACCCACCGAGTCG
CCTGTGCTGATCCGTGGTGAAAGCGGCACGGGCAAGGAACTGGTGGCTCGCACCCTGCACCGGCAGTCGCAACGCAGTGA
CCAGCCGTTCGTCGCCATCAACTGCGGGGCAATCCCCGAGCACCTGATCCAGTCCGAACTGTTCGGCCATGAGAAGGGCG
CTTTCACTGGTGCCCATCAGCGCAAGACCGGGCGCATTGAAGCCGCCCACGGTGGCACGTTGTTTCTGGATGAAATTGGT
GACTTGCCGCTGGAATTGCAGGCCAATCTGCTGCGTTTTCTACAAGAAAAGCACATCGAGCGGGTGGGCGGCAGCCAGCC
GATTCCGGTGGATGCGCGGGTTCTGGCCGCCACCCACGTGGACCTGGAAAGAGCCATCGAACAGGGGCGTTTTCGCGAAG
ACCTGTATTACCGCCTGAACGTATTGCAGGTGGTGACCGCGCCCCTGCGGGACCGACATGGTGACTTGTCGATGCTGGCC
AGCCATTTTGCCCATTTCTATAGCCTGGAAACCGGGCGCCGGCCGCGTTCATTCAGCGACCATGCCCTGGCGGCCATGGG
CCGGCATGACTGGCCGGGCAATGTACGCGAGCTGGCCAACCGGGTGCGCCGCGGCCTGGTACTCGCCGAAGGCCGGCAGA
TCGAGGCGCAGGACCTAGGCCTGCAGACGTTGGACCCAGGGCAGCAGCCGCTGGGCACACTAGAGGAATACAAGCAGCGG
GCCGAGCGCCAGGCCTTGTGCGATGTGCTTAACCGGCATAGCGATAACATGAGCGTAGCGGCGAAGGTGCTGGGGATCTC
CCGGCCCACCTTCTACCGCTTGCTGCACAAGCATCAGATACGCTGA

Protein sequence : 
MLQPAAQRRLLIVDPCDDCHQLLPGLSSAGWDVDSCVLGAALDHPCDVGLLRLQASHLRHPDAVKDMIKRSNTEWIAVLS
AEQLRMPAVGDFVCEWFFDFHTLPFDVSRVQVTLGRAFGMARLRGKGAAKVDDATHELLGESRPIRELRKLLGKLAPTES
PVLIRGESGTGKELVARTLHRQSQRSDQPFVAINCGAIPEHLIQSELFGHEKGAFTGAHQRKTGRIEAAHGGTLFLDEIG
DLPLELQANLLRFLQEKHIERVGGSQPIPVDARVLAATHVDLERAIEQGRFREDLYYRLNVLQVVTAPLRDRHGDLSMLA
SHFAHFYSLETGRRPRSFSDHALAAMGRHDWPGNVRELANRVRRGLVLAEGRQIEAQDLGLQTLDPGQQPLGTLEEYKQR
AERQALCDVLNRHSDNMSVAAKVLGISRPTFYRLLHKHQIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 9e-56 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 9e-56 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP4_23370 YP_008113374.1 putative transcriptional regulator BAC0022 Protein 4e-49 43
PP4_23370 YP_008113374.1 putative transcriptional regulator BAC0467 Protein 6e-65 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP4_23370 YP_008113374.1 putative transcriptional regulator VFG1214 Protein 3e-60 45