Gene Information

Name : gabD (PP4_20680)
Accession : YP_008113105.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Unknown
Product : succinate-semialdehyde dehydrogenase GabD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2344121 - 2345569 bp
Length : 1449 bp
Strand : +
Note : -

DNA sequence :
ATGAAACTTGCCGATCGTGATCTGCTGCGTGAAGTTTGCTATATCGATGGAAAATGGCTGGCGGCTGACAGCGGCCAGCG
CATTGCCGTGACCAACCCGGCCACCGGCCAAGTGCTGGGCCATGTGCCGCGGATGGGGGCAGAAGAAACCCGCCGTGCCA
TCGCGGCTGCCGAGTGCGCCTTGCCAGCGTGGCGGGCGCTGACTGCCAAGGAGCGTGCCGCCCGGCTGCAGGCCTGGTTC
CGTGAAATCCTCGCTCATCAGGAAGACCTGGCGCGCATCATGACCGCCGAGCAGGGCAAGCCGCTGGCCGAATCCCGTGG
CGAGATTGCCTTTGCCGCCGCTTATGTAGAGTTCTATGCCGAGGAAGGCAAACGCATCTATGGCGATGTGATTCCTTCGC
CGAACGCTGATCGGCGCTTGATCGTGACCAAGGAGCCGATTGGTGTGTGTGCGGCGATTACACCTTGGAACTTCCCGGCG
GCGATGATCACCCGCAAGGCGGCGCCGGCTTTGGCGGCGGGCTGCACGTTGGTGCTCAAGCCCGCTTCGCAAACCCCGTT
CAGCGCGCTGGCACTGTGCGTGCTGGCTGAGCGTGCCGGTATCCCGGTGGGTGTGCTCAGCGTGGTGACGGGCGATTCGG
CGGCCATTGGCGGCGAGCTGACGGCCAGCCCGGTGGTGCGCAAGTTGTCGTTCACCGGCTCGACCCCCATCGGCATCCAG
TTGCTGCAGCAGTCGGCGGCAACGGTGAAGAAGGTGACCATGGAGCTGGGCGGCAACGCCCCGTTCATCGTGTTCGACGA
TGCCGACCTGGAAAAGGCGGTGGAAGGCGCGCTGATCGCCAAGTTCCGCAACAGCGGGCAGACCTGCGTGTGCGCCAACC
GCTTCTATATCCAGGACGGCATCTACGAGCGCTTCGTGGCGCGCTTTGCCGAGCGCGTGGGTGAGCTGGTCGTCGGGCGG
GGCGATGCACCAGGTACACAGGTCGGGCCGATGATCGACGGGCGTGCGGCCAGTGGTGTCGAACGGCTGGTCGGCGAGGC
TGTGGAGGCCGGTGCGCGGGTGGTGACGGGAGGGCGTCGGCACGCGATGGGCGAGGCCTTCTTCGAGCCGACCTTGCTGG
CGGATGTGGCGCCGGACATGCGCGTGGCGCGCGAGGAAATTTTCGGGCCGGTGGCGCCGATCTTCCGCTTCGGCAGTGAG
GAGGAGGTGATTGCCCAGGCCAACGACACCGAGTTCGGCCTGGCCTGCTACCTCTATGCCCGGGATGTCGGGCGCATCTG
GCGGGTGACGGAAGCGCTGGAGTACGGCATGGTCGGGGTCAACGTCGGCGTGGTGGCGACCGAAGTGGCGCCGTTTGGTG
GGGTGAAGGCCTCGGGGTTGGGCAGGGAAGGGTCACGCTACGGGATCGAGGATTACCTGGAGCTCAAGTATGTGTGCCTT
GGGCTATAA

Protein sequence :
MKLADRDLLREVCYIDGKWLAADSGQRIAVTNPATGQVLGHVPRMGAEETRRAIAAAECALPAWRALTAKERAARLQAWF
REILAHQEDLARIMTAEQGKPLAESRGEIAFAAAYVEFYAEEGKRIYGDVIPSPNADRRLIVTKEPIGVCAAITPWNFPA
AMITRKAAPALAAGCTLVLKPASQTPFSALALCVLAERAGIPVGVLSVVTGDSAAIGGELTASPVVRKLSFTGSTPIGIQ
LLQQSAATVKKVTMELGGNAPFIVFDDADLEKAVEGALIAKFRNSGQTCVCANRFYIQDGIYERFVARFAERVGELVVGR
GDAPGTQVGPMIDGRAASGVERLVGEAVEAGARVVTGGRRHAMGEAFFEPTLLADVAPDMRVAREEIFGPVAPIFRFGSE
EEVIAQANDTEFGLACYLYARDVGRIWRVTEALEYGMVGVNVGVVATEVAPFGGVKASGLGREGSRYGIEDYLELKYVCL
GL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf17 AAO17183.1 Orf17 Not tested tcd island Protein 2e-120 63