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Name : topB (PP4_17340) Accession : YP_008112771.1 Strain : Pseudomonas putida NBRC 14164 Genome accession: NC_021505 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : - COG ID : - EC number : - Position : 2015066 - 2017027 bp Length : 1962 bp Strand : - Note : - DNA sequence : ATGCGCCTGTTCCTCTGCGAAAAACCCTCACAGGCAAAAGACATCGCCAAAGTGCTAGGCGCCACCCGCAAGGGCGACGG CTGCTGGCAAGGCACTGACGTCTGCGTAACCTGGTGCATCGGCCATCTGCTGGAAACCGCCCCGCCCGACAGCTACGACG AACGCTACAAGCGCTGGAACCTGGCCGACCTGCCGATCATCCCGGACAAGTGGAAGATGCTGGTCAAGCCCAAGACCGCC AGCCAGTTCAAGGCGGTGAAGCGCCTGCTGGGCGAAGCGCGGGAGCTGGTGATTGCCACCGACGCCGACCGCGAAGGCGA AATGATTGCCCGCGAGCTGGTCGAGCATTGCCGCTACCGCGGCCCGGTGCAGCGCCTTTGGTTGTCGGCGCTCGACGACA CCTCCATCCGCAAGGCCCTGGCACGCCTGCTGCCAGGCCACGAAACGTTCAACCTTTATCACTCGGCGCTGGGCCGCTCT CGCGCCGACTGGCTCATCGGCATGAACATGAGCCGGCTGTTCACCCTGCTTGGCCGCCAATCCGGCTACCAGGGTGTGCT GCCGGTGGGCCGGGTGCAAACCCCCACCTTGCGCCTGGTGGTCGACCGCGACCGCAGCATCGCCGACTTCGTGCCGGTGC CGTTCTGGGCCATCGACGTACAGCTTGAACATGCAGGACAAGCTTTCAACGCCCAGTGGCGTGCGCCCGAGGACGCCTGC GACGACCAGGGCCGCTGCCTGAACCAGAGCTTGGCGCAACAGGCCGCCGCCGCCATCGGTAACGCTGGCACGGCACGGGC CGTAAAAGTGACCACCGAGCGCGTGCGTGAAGCCGCGCCCTTGCTTTTCGACCTTGGCACCCTGCAAGAGCTGTGCTCGA AAAAGTTCGGCCTCGGCGCCCAGGAAACCCTCGACATTGCCCAGGCCCTGTACGAAACCCACAAGCTCATCACCTACCCG CGCAGCGATTGCGGCTACCTGCCGCTGAGCCAGCACGCCGAAGCACCGGCCATCCTCGCCGCCCTGCAACGGGCCGATGC CGGCCTCGCGCCGCTGCAGCCCCACCTGGAGCCGCAGCGCCGGTCGCGGGTGTGGAACGACGCCAAGGTCAGCGCCCACC ACGGCATCATTCCTACTGCCGCCGCCAGCGACCCGTCGCGCCTGCCGGCCAAGCACAAGGCGGTGTACACCCTGATCCGC GCCCGCTACCTGGCGCAGTTCCTGCCCAACCACGAATATGATCGCACCCAGGCCGACTTCGACTGCGCCGGCCATGCCCT GCGCGCGGTGGGCAAGCAAATCGTCGAGCCGGGCTGGCGCCGCGCCCTGCCCGAAGCGCTGACCCCGGCCAAGGGCCGCG AAGCACCACCGGCCCAGGTGCTGCCAGCGCTGAGCGAAGGCCAGGACTGCACCGTCCAAGGCCTGCAACTGAAAGACCTG TGGACCCAGCCGCCCAAGCCGTTCACTGAAGGCGACCTGATCAAGGCAATGAAAAACGTGGCCAAGCTGGTGGACGACCC GCGCCTGAAGCAGAAGCTGAAAGAAACCACCGGCATCGGCACCGAGGCCACCCGCGCCAGCATCATCCAGGGCCTGCTCG ACCGCGGCTATCTCGTAAAAAACGGCAAAGCGCTGGCGGCCACGCCTGCGGCCTTCAGCCTGATTGATGCCGTCCCCCGC GCCATCGCCGACCCTGGCACCACGGCGATCTGGGAGCAGGCGCTGGACATGGTGCAAAGCGGCGAGATGAGCCTGGAAGA ATTCGTGGCCCGACAGTCGGCGTGGATGGGCAAGCTGGTCGAGCGTTGCAGCGGCATGCGCATGACCATCAGCGGGCCGG CAGCCGGTGCAGCGCCGCCCTGGAAGAAGAAGCGTCGCGGTGGAGGTGGGAAAAGCAAAGCAGCCGGAAGCAAGTCAGCA GCAAGCAAGCCGCGTCAGCCCCGAAAAAAAGCGACAACCTGA Protein sequence : MRLFLCEKPSQAKDIAKVLGATRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRWNLADLPIIPDKWKMLVKPKTA SQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYRGPVQRLWLSALDDTSIRKALARLLPGHETFNLYHSALGRS RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVQLEHAGQAFNAQWRAPEDAC DDQGRCLNQSLAQQAAAAIGNAGTARAVKVTTERVREAAPLLFDLGTLQELCSKKFGLGAQETLDIAQALYETHKLITYP RSDCGYLPLSQHAEAPAILAALQRADAGLAPLQPHLEPQRRSRVWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIR ARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALSEGQDCTVQGLQLKDL WTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKALAATPAAFSLIDAVPR AIADPGTTAIWEQALDMVQSGEMSLEEFVARQSAWMGKLVERCSGMRMTISGPAAGAAPPWKKKRRGGGGKSKAAGSKSA ASKPRQPRKKATT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 64 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 63 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 63 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 2e-148 | 51 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 6e-151 | 50 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 6e-151 | 50 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 4e-151 | 50 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 2e-148 | 50 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 1e-115 | 43 |
