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Name : LRI_2018 (LRI_2018) Accession : YP_008111021.1 Strain : Genome accession: NC_021504 Putative virulence/resistance : Resistance Product : TetW Function : - COG functional category : - COG ID : - EC number : - Position : 1 - 1920 bp Length : 1920 bp Strand : + Note : - DNA sequence : ATGAAAATAATCAATATTGGAATTCTTGCCCATGTAGACGCTGGAAAGACGACCTTGACGGAGAGCCTGCTATATGCCAG CGGAGCCATTTCAGAACCGGGGAGCGTCAAAAAAGGGACAACGAGGACGGACACCATGTTTTTGGAGCGGCAGCGTGGGA TTACCATTCAAGCGGCAGTCACTTCCTTCCAGTGGCACAGATGTAAAGTCAACATTGTGGATACGCCCGGCCACATGGAT TTTTTGGCGGAGGTGTACCGCTCTTTGGCTGTTTTAGATGGGGCCATCTTGGTGATCTCCGCTAAAGATGGCGTGCAGGC CCAGACCCGTATTCTGTTCCATGCCCTGCGGAAAATGAACATTCCCACCGTTATCTTTATCAACAAGATCGACCAGGCTG GCGTTGATTTGCAGAGCGTGGTTCAGTCTGTTCGGGATAAGCTCTCCGCCGATATTATCATCAAGCAGACGGTGTCGCTG TCCCCGGAAATAGTCCTGGAGGAAAATACCGACATAGAAGCATGGGATGCGGTCATCGAAAATAACGATAAATTATTGGA AAAGTATATCGCAGGAGAACCAATCAGCCGGGAAAAACTTGTGCGGGAGGAACAGCGGCGGGTTCAAGACGCCTCCCTGT TCCCGGTCTATTATGGCAGCGCCAAAAAGGGCCTTGGCATTCAACCGTTGATGGATGCGGTGACAGGGCTGTTCCAACCG ATTGGGGAACAGGGGAGCGCCGCCCTATGCGGCAGCGTTTTCAAGGTGGAGTATACAGATTGCGGCCAGCGGCGTGTCTA TCTACGGCTATACAGCGGAACGCTGCGCCTGCGGGATACGGTGGCCCTGGCCGGGAGAGAAAAGCTGAAAATCACAGAGA TGCGTATTCCATCCAAAGGGGAAATTGTTCGGACAGACACCGCTTATCCGGGTGAAATTGTTATCCTTCCCAGCGACAGC GTGAGGTTAAACGATGTATTAGGGGACCCAACCCGGCTCCCTCGTAAAAGGTGGCGTGAGGACCCCCTCCCCATGCTGCG GACGTCGATTGCGCCGAAAACGGCAGCGCAAAGAGAACGGCTGCTGGACGCTCTTACGCAACTTGCGGATACTGACCCGC TTTTGCGCTGCGAGGTGGATTCCATCACCCATGAGATCATTCTTTCTTTTTTGGGCCGGGTGCAGTTGGAGGTTGTTTCC GCTTTGCTGTCGGAAAAATACAAGCTTGAAACAGTGGTAAAGGAACCCACCGTCATTTATAAGGAGCGGCCGCTCAAAGC AGCCAGCCACACCATCCATATCGAGGTGCCGCCCAACCCGTTTTGGGCATCCATCGGACTGTCTGTTACACCACTCCCGC TTGGCTCCGGTGTACAATACGAGAGCCGGGTTTCGCTGGGATACTTGAACCAGAGTTTTCAAAACGCTGTCAGGGATGGT ATCCGTTACGGGCTGGAGCAGGGCTTGTTCGGCTGGAACGTAACGGACTGTAAGATTTGCTTTGAATACGGGCTTTATTA CAGTCCGGTCAGCACGCCGGCGGACTTCCGCTCATTGGCCCCGATTGTATTGGAACAGGCATTGAAGGAATCAGGGACGC AACTGCTGGAACCTTATCTCTCCTTCACCCTCTATGCGCCCCGGGAATATCTTTCCAGGGCTTATCATGATGCACCGAAA TACTGTGCCACCATCGAAACGGTCCAGGAAAAAAAGGATGAAGTTGTCTTTACTGGCGAGATTCCCGCCCGCTGTATACA GGCATACCGTACTGATCTGGCCTTTTACACCAACGGGCAGAGCGTATGCCTTACAGAACTGAAAGGGTATCAGGCCGCTG ACGGCAAGCCAGTCATCCAGCCCCGCCGTCCAAACAGCCGCCTGGACAAGGTGCGCTATATGTTTCAGAAGATAATGTAA Protein sequence : MKIINIGILAHVDAGKTTLTESLLYASGAISEPGSVKKGTTRTDTMFLERQRGITIQAAVTSFQWHRCKVNIVDTPGHMD FLAEVYRSLAVLDGAILVISAKDGVQAQTRILFHALRKMNIPTVIFINKIDQAGVDLQSVVQSVRDKLSADIIIKQTVSL SPEIVLEENTDIEAWDAVIENNDKLLEKYIAGEPISREKLVREEQRRVQDASLFPVYYGSAKKGLGIQPLMDAVTGLFQP IGEQGSAALCGSVFKVEYTDCGQRRVYLRLYSGTLRLRDTVALAGREKLKITEMRIPSKGEIVRTDTAYPGEIVILPSDS VRLNDVLGDPTRLPRKRWREDPLPMLRTSIAPKTAAQRERLLDALTQLADTDPLLRCEVDSITHEIILSFLGRVQLEVVS ALLSEKYKLETVVKEPTVIYKERPLKAASHTIHIEVPPNPFWASIGLSVTPLPLGSGVQYESRVSLGYLNQSFQNAVRDG IRYGLEQGLFGWNVTDCKICFEYGLYYSPVSTPADFRSLAPIVLEQALKESGTQLLEPYLSFTLYAPREYLSRAYHDAPK YCATIETVQEKKDEVVFTGEIPARCIQAYRTDLAFYTNGQSVCLTELKGYQAADGKPVIQPRRPNSRLDKVRYMFQKIM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tet(W) | YP_005160006.1 | tetracycline resistance protein | Not tested | Not named | Protein | 0.0 | 99 |
| SSU05_0922 | YP_001198287.1 | translation elongation factor (GTPases) | Not tested | 89K | Protein | 0.0 | 69 |
| SSU98_0928 | YP_001200485.1 | translation elongation factor (GTPases) | Not tested | 89K | Protein | 0.0 | 69 |
| tetO | AFJ97266.1 | truncated tetracycline resistant protein | Not tested | Not named | Protein | 4e-132 | 62 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LRI_2018 | YP_008111021.1 | TetW | DQ294299.gene.p01 | Protein | 0.0 | 99 |
| LRI_2018 | YP_008111021.1 | TetW | AJ222769.gene.p01 | Protein | 0.0 | 97 |
| LRI_2018 | YP_008111021.1 | TetW | AY485126.gene.p01 | Protein | 0.0 | 96 |
| LRI_2018 | YP_008111021.1 | TetW | AJ295238.gene.p01 | Protein | 0.0 | 69 |
| LRI_2018 | YP_008111021.1 | TetW | AM180355.1.gene636.p | Protein | 0.0 | 69 |
| LRI_2018 | YP_008111021.1 | TetW | X04388.gene.p01 | Protein | 0.0 | 69 |
| LRI_2018 | YP_008111021.1 | TetW | M85225.gene.p01 | Protein | 0.0 | 69 |
| LRI_2018 | YP_008111021.1 | TetW | NC_002758.1120355.p0 | Protein | 0.0 | 68 |
| LRI_2018 | YP_008111021.1 | TetW | NC_009782.5559075.p0 | Protein | 0.0 | 68 |
| LRI_2018 | YP_008111021.1 | TetW | FN594949.1.gene24.p0 | Protein | 0.0 | 68 |
| LRI_2018 | YP_008111021.1 | TetW | L09756.gene.p01 | Protein | 0.0 | 67 |
| LRI_2018 | YP_008111021.1 | TetW | AJ514254.gene.p01 | Protein | 2e-112 | 44 |
| LRI_2018 | YP_008111021.1 | TetW | L42544.gene.p01 | Protein | 5e-121 | 44 |
| LRI_2018 | YP_008111021.1 | TetW | Z21523.gene.p01 | Protein | 3e-102 | 42 |
