Gene Information

Name : fliI (H650_05485)
Accession : YP_008106941.1
Strain : Enterobacter sp. R4-368
Genome accession: NC_021500
Putative virulence/resistance : Virulence
Product : ATP synthase
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.14
Position : 1017676 - 1019046 bp
Length : 1371 bp
Strand : +
Note : involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :
ATGACCGCACGTTTGACCCGCTGGCTAACGACGCTGGATAACTTTGAAGTCAAAATGGCGCAGCTGCCCGCTGTGCGCCG
TTATGGTCGGCTGACCCGCGCGACCGGGCTGGTGCTGGAAGCCACCGGCCTGCAGCTGCCGCTGGGCGCGACCTGCATTA
TTGAGCGTCAGGACGGTGTCGAAACGCGCGAAGTCGAATGCGAAGTGGTTGGCTTCAACGGCCAGCGCCTGTTTTTAATG
CCGCTGGAAGAAGTTGAAGGTATTTTGCCTGGCGCGCGCGTTTATGCCCGCAGCGTGTTAGGTGATGGTTTGCAAAGCGG
TAAACAGCTGCCGCTCGGCCCTGCCCTGCTTGGCCGCGTGCTGGATGGCGGCGGCAAGCCGCTCGACGGTCTGCCTGCAC
CGGAAACCGGTGAGACCGGCGCACTGGTCACGCAGCCGTTTAACCCCTTACAACGTACGCCGATTGAGCATGTGCTGGAT
ACCGGCGTACGCGCCATTAACGCCCTGCTGACCGTCGGTCGTGGTCAGCGTATGGGTCTGTTCGCCGGTTCCGGCGTCGG
TAAAAGCGTGCTGTTAGGCATGATGGCCCGTTATACCCAGGCCGACGTTATTGTCGTCGGGCTGATTGGTGAACGTGGCC
GCGAAGTAAAAGATTTTATCGAGAACATCCTTGGCGCAGAAGGCCGCGCACGTTCGGTGGTGATTGCCGCCCCGGCAGAC
GTTTCTCCTTTATTGCGTATGCAGGGCGCTGCGTACGCGACGCGCATTGCTGAAGATTTCCGCGACCGCGGTCAGCATGT
GCTTCTGATCATGGACTCCCTGACGCGTTATGCCATGGCGCAGCGTGAAATCGCGCTGGCAATTGGCGAACCGCCAGCGA
CGAAAGGTTATCCCCCTTCTGTCTTCGCCAAATTACCGGCGCTGGTGGAACGCGCGGGGAACGGTATTCACGGCGGCGGT
TCGATCACCGCGTTTTATACCGTTCTGACCGAAGGGGATGACCAGCAGGATCCGATCGCTGACTCCGCACGAGCCATTCT
TGATGGGCACATTGTCTTGTCCCGCCGCCTGGCGGAAGCCGGTCACTACCCGGCCATTGACATTGAAGCCTCTATCAGCC
GTGCGATGACAGCGTTAATTACGGAACAACATTACGCCAGAGTCCGGAACTTTAAGCAGTTGCTGTCGAGCTTCCAGCGT
AACCGCGATCTGGTTAGCGTTGGCGCATATGCGCGCGGTAGCGACCCAATGCTGGATAAAGCCATCGCATTGTGGCCACA
CCTGGAAGCCTTCCTGCAGCAGGGCATTTTTGAACGTGCCGGGTGGGAAGATTCAATGCAGGCATTAGAGCTGATCTTCC
CGACAGTCTAA

Protein sequence :
MTARLTRWLTTLDNFEVKMAQLPAVRRYGRLTRATGLVLEATGLQLPLGATCIIERQDGVETREVECEVVGFNGQRLFLM
PLEEVEGILPGARVYARSVLGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPETGETGALVTQPFNPLQRTPIEHVLD
TGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPAD
VSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGG
SITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYARVRNFKQLLSSFQR
NRDLVSVGAYARGSDPMLDKAIALWPHLEAFLQQGIFERAGWEDSMQALELIFPTV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 2e-73 49
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-78 48
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-79 48
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 7e-79 48
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 7e-79 48
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 6e-79 48
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 3e-79 48
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-79 48
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-75 47
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-75 47
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 9e-65 47
lscN AAO18044.1 LscN Virulence TTSS locus Protein 1e-69 46
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-64 46
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-64 46
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-64 46
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-64 46
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 8e-66 45
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 8e-66 45
escN NP_290268.1 hypothetical protein Virulence LEE Protein 4e-67 45
ECs4568 NP_312595.1 EscN Virulence LEE Protein 4e-67 45
escN AAC38383.1 EscN Virulence LEE Protein 4e-67 45
escN AAC31513.1 L0034 Virulence LEE Protein 3e-67 45
escN YP_003236088.1 translocator EscN Virulence LEE Protein 4e-67 45
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 3e-67 45
escN YP_003223475.1 translocator EscN Virulence LEE Protein 3e-67 45
escN CAI43874.1 EscN protein Virulence LEE Protein 3e-67 45
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-65 45
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 8e-64 44
escN AAL57542.1 EscN Virulence LEE Protein 8e-67 44
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 7e-67 44
escN CAC81862.1 EscN protein Virulence LEE II Protein 6e-67 44
escN AAK26715.1 EscN Virulence LEE Protein 8e-67 44
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 1e-63 43
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 1e-71 43
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 5e-67 42
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 4e-67 42
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 8e-67 42
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 8e-70 42
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 5e-58 42
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 6e-61 41
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 6e-61 41
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 5e-68 41
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 3e-68 41
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 1e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_008106941.1 ATP synthase VFG2331 Protein 8e-170 85
fliI YP_008106941.1 ATP synthase VFG2499 Protein 7e-140 69
fliI YP_008106941.1 ATP synthase VFG1254 Protein 3e-114 60
fliI YP_008106941.1 ATP synthase VFG2144 Protein 2e-80 46
fliI YP_008106941.1 ATP synthase VFG0515 Protein 9e-65 46
fliI YP_008106941.1 ATP synthase VFG0048 Protein 6e-77 45
fliI YP_008106941.1 ATP synthase VFG0192 Protein 9e-69 45
fliI YP_008106941.1 ATP synthase VFG0812 Protein 2e-67 45
fliI YP_008106941.1 ATP synthase VFG0730 Protein 2e-67 45
fliI YP_008106941.1 ATP synthase VFG0390 Protein 5e-70 44
fliI YP_008106941.1 ATP synthase VFG2459 Protein 2e-62 42
fliI YP_008106941.1 ATP synthase VFG1008 Protein 3e-62 41