Gene Information

Name : H650_18245 (H650_18245)
Accession : YP_008109403.1
Strain : Enterobacter sp. R4-368
Genome accession: NC_021500
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3643134 - 3644390 bp
Length : 1257 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGGCCCTGACTGATACCAAAGTGCGTTCGGCAAAACCTGAAGTGAAGGAATACTCACTAGTAGACGGTGATGGCATGTT
TTTGCTGATACACCCTAACGGCTCCATATACTGGCGCTTCCGTTTCCGCTTCGGTGGTAAGCAACACCTGATGGCTTTTG
GAGTTTATCCTGAAACGTCATTAGCTGATGCTCGTCAAAAGAGGGAAGAGGCCAGAAAGCTTGTTGCTGCCGGTGTCGAT
CCTCGTGAACATAAACGTGCAGTGAAAGAAGAACAGGCTAAAGAAGTCATCACATTTGAATCTGTTGCCAGAGACTGGCA
TGCCAGTAATCAAAAGTGGTCTGAGTCGCACAGTGGCCGTGTTCTTAAGAGTCTGGAAGATAATCTGTTCGATGCGATTG
GGAAGCGGAATATCGCTGAGTTAAAAACCAGAGATTTACTTATTCCCATTAAAGCCGTAGAGATGTCTGGACGTCTTGAG
GTTGCGGCGCGTTTACAGCAACGAACAACAGCAATTATGCGATTTGCCGTGCAAAGCGGTTTAATCGATTATAACCCCGC
ACAAGAGATCGCTGGAGCGGTTGCTACAGCAAAACGGCAACATCGCGCTGCGCTAGAACTTAATCGTATTCCTGAACTAC
TTCATCGTATCGACACATATACCGGCAGACCACTAACACGCTTAGCTGTGGAGCTGACGTTGCTGGTATTCATTCGATCT
AGTGAACTGCGTTTTGCACGCTGGTCAGAAGTCGATTTTGAAATTGCTATGTGGACGATTCCGGGGGAACGTGAACCACT
GGAAGGTGTGAAACATTCACATCGAGGATCAAAGATGCGTACTCCTCATCTTGTTCCTTTATCAAGTCAGGCTCTGACCA
TTCTTGAAAAGATCAAAAGCATGAGTGGAAACCGTGAGCTGATTTTCGTAGGTGATCATGATCCACGTAAGCCGATGAGT
GAAAACACGGTGAATAAGGCGCTGCGAGTTATGGGCTACGATACGAAAGTTGAAGTATGTGGTCATGGTTTCAGAACTAT
GGCCTGTAGTTCCTTGATTGAGTCGGGATTATGGTCGAAGGATGCGGTAGAGCGACAGATGAGTCACCAGGAACGTAACT
CCGTGCGTGCGGCTTACATTCATAAGGCAGAGCATTTGGGGGAGCGCAGGCTGATGGTGCAGTGGTGGGCAGATTATCTG
GATGTGAATCGAGAGAAGGGAATTAGTCCGTTTGATTTTGGGAAAAAGAATGGATAA

Protein sequence :
MALTDTKVRSAKPEVKEYSLVDGDGMFLLIHPNGSIYWRFRFRFGGKQHLMAFGVYPETSLADARQKREEARKLVAAGVD
PREHKRAVKEEQAKEVITFESVARDWHASNQKWSESHSGRVLKSLEDNLFDAIGKRNIAELKTRDLLIPIKAVEMSGRLE
VAARLQQRTTAIMRFAVQSGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDTYTGRPLTRLAVELTLLVFIRS
SELRFARWSEVDFEIAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSSQALTILEKIKSMSGNRELIFVGDHDPRKPMS
ENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSKDAVERQMSHQERNSVRAAYIHKAEHLGERRLMVQWWADYL
DVNREKGISPFDFGKKNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 4e-150 77
int AAK00456.1 Int Not tested SHI-1 Protein 3e-138 69
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 8e-144 68
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 7e-147 68
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-146 68
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-146 68
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 8e-147 68
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 7e-147 68
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-145 68
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-145 68
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-145 68
int CAC81896.1 integrase Not tested LEE II Protein 2e-136 68
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 5e-144 68
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-145 68
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-144 67
int AAL51003.1 CP4-like integrase Not tested LEE Protein 9e-145 67
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-144 67
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 5e-145 67
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 4e-145 67
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 5e-145 67
int AAL51028.1 CP4-like integrase Not tested LEE Protein 4e-145 67
int-phe AAL60261.1 Int-phe Not tested LEE Protein 4e-145 67
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-130 62
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-130 62
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 3e-82 58
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 5e-95 56
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-119 56
int YP_002346908.1 integrase Not tested HPI Protein 1e-110 55
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 1e-110 55
int CAA08754.1 integrase Not tested HPI Protein 4e-111 55
int2 NP_993013.1 integrase Not tested HPI Protein 1e-110 55
int CAB59974.1 integrase Not tested HPI Protein 1e-111 55
int CAA21384.1 - Not tested HPI Protein 1e-110 55
unnamed AAD17660.1 unknown Not tested HPI Protein 8e-108 54
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 8e-115 53
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 8e-115 53
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 4e-106 52
int AAD44730.1 Int Not tested SHI-2 Protein 1e-82 43
int CAC39282.1 integrase Not tested LPA Protein 3e-83 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 3e-83 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-81 42
int ACU09430.1 integrase Not tested LEE Protein 2e-81 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-81 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-81 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-81 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-81 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-81 42
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-73 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H650_18245 YP_008109403.1 integrase VFG1536 Protein 2e-150 77
H650_18245 YP_008109403.1 integrase VFG0626 Protein 3e-147 68
H650_18245 YP_008109403.1 integrase VFG1693 Protein 6e-146 68
H650_18245 YP_008109403.1 integrase VFG0783 Protein 1e-81 42
H650_18245 YP_008109403.1 integrase VFG0598 Protein 2e-81 42