Gene Information

Name : PCA10_09420 (PCA10_09420)
Accession : YP_008101279.1
Strain : Pseudomonas resinovorans NBRC 106553
Genome accession: NC_021499
Putative virulence/resistance : Virulence
Product : putative two-component response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1005253 - 1006590 bp
Length : 1338 bp
Strand : -
Note : -

DNA sequence : 
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAATTGCTGGAGATCACCCTCGGGCGGATGAA
GCTCGACACCCGCAGTGCCCGCAACCTCAAGGAAGCCCGCGAGTGGCTGGCGCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAGCGCCATCCCCTGGTACCGGTGGCGATG
ATCACCGCCTACGGCAGCCTCGACACCGCCGTGAACGCCCTCAAGGCCGGTGCCTTCGACTTCGTCACCAAACCGGTGGA
CCTCGGCCGCCTGCGTGAGCTGGTCAACACCGCCCTGCGCCTGAGCACCCCGGAAGACGGCGAAGCGCCGGTAGACGGCC
GCCTGCTGGGCGCCTCGCCGCCGATGAACGCCCTGCGCAAGCAGATCCAGAAGCTCTCCCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAACAGGGCCCCCGCGCCGACCAGCCCTT
CGTGCCGGTCAACTGCGGCGCCATCCCCTCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAACAGGGGCTGTTCCAGGCGGCCAACGGCGGCACCCTGTTCCTCGATGAAGTGGCCGACCTGCCG
TTGCCGATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAGGCCGTACGCGCCGTCGGTGGCCAGCAGGAGGTGGTGGT
GGATGTACGCATCCTCAGCGCCACCCACAAGGACCTGGCCGCCGAGGTGGCCGCAGGCCGCTTCCGCCAGGACCTCTACT
ACCGGCTCAACGTCATCGAACTCAGCGTGCCGCCACTGCGCGAACGCCGCGAGGATATCCCGCTGCTGGTCGACAGCATG
CTCAAGCGCCTGGCCCAGCAAAGCGGGCTGCACGTCGCCAGCCTGGCCCCCGAGGCACTGGATAAGCTCAAGTGCTACCG
CTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAACGCGCCTACACCCTCTGCGAGGATGACCAGATACAGGCTC
GCGACCTGCGTCTGGCGGATGCCAGCGGAGCCGCCGAGAACGGCGAGGCCAACCTGGCGCAGATCGACAACCTGGAAGAC
TACCTGGAAGGCGTCGAGCGCAAGCTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACCGCAGCGGCGCAGCG
CCTGGGCCTGACCTTCCGCTCGATGCGCTATCGCCTGAAGAAGCTGGGCATCGATTGA

Protein sequence : 
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNLKEAREWLAREPFDLCLTDMRLPDGTGLELVQHIQQRHPLVPVAM
ITAYGSLDTAVNALKAGAFDFVTKPVDLGRLRELVNTALRLSTPEDGEAPVDGRLLGASPPMNALRKQIQKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRADQPFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPLLVDSM
LKRLAQQSGLHVASLAPEALDKLKCYRFPGNVRELENMLERAYTLCEDDQIQARDLRLADASGAAENGEANLAQIDNLED
YLEGVERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-105 48
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-105 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCA10_09420 YP_008101279.1 putative two-component response regulator BAC0467 Protein 6e-81 45
PCA10_09420 YP_008101279.1 putative two-component response regulator BAC0089 Protein 3e-76 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCA10_09420 YP_008101279.1 putative two-component response regulator VFG1214 Protein 0.0 87
PCA10_09420 YP_008101279.1 putative two-component response regulator VFG0116 Protein 6e-61 42