Gene Information

Name : lolD (PCA10_55770)
Accession : YP_008105914.1
Strain : Pseudomonas resinovorans NBRC 106553
Genome accession: NC_021499
Putative virulence/resistance : Virulence
Product : lipoprotein-releasing ABC transporter ATP-binding protein LolD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6203887 - 6204573 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGATCCTGATGCACCAGGTCAGCCGCTGCTTCCAGCTGGGCGAGCAACGGGTGCGTGGCCTCGACCACCTGGACCTGGA
GGTGGCCGACGGCGAGTACCTGGCCATCACCGGCGCCTCGGGCTCCGGCAAGTCCACCCTGCTGAACATCCTCGGTCTGC
TGGATGCGCCGGACAGCGGCGAGCTCTGGCTGGACGAGGAACCCACCGCCTGCCTGCGGGAGGAGCGCCGTTCCTGCCTG
CGCAGCCAGCTGATCGGCTTCGTTTTCCAGTCGTTCCACCTGATCCCGCGGCTGACCGCACTGGAGAACATCGAACTGCC
CATGCTGCTGGCCGGCATCGAACCCGCCGAGCGTCACCGCCGCAGCCGGCAGCTGGCCGACTGCCTGGGCCTGGGCGATC
GCCTGTCGCACCACCCGGCGGAGCTTTCCGGCGGCCAGCGGCAACGGGTGGCCATCGCCCGCGCCATGGTGATGCGCCCG
CGGCTGCTGCTGGCCGACGAACCCACCGGCAACCTCGACAGCCAGTCCGGCGCGGAGGTGTTGGCGCTGCTGGAGGCGCT
GAACGCCGAGGGCCTTACCCTGATCCTGGTGACCCATGACGACCATCACGCCGCTCGCGCCCGGCGTCGCATCCAGATGT
GCGACGGCCGCATCCTCAGCGACCGGTGCCAGGGCCTGGTGTCCTGA

Protein sequence : 
MILMHQVSRCFQLGEQRVRGLDHLDLEVADGEYLAITGASGSGKSTLLNILGLLDAPDSGELWLDEEPTACLREERRSCL
RSQLIGFVFQSFHLIPRLTALENIELPMLLAGIEPAERHRRSRQLADCLGLGDRLSHHPAELSGGQRQRVAIARAMVMRP
RLLLADEPTGNLDSQSGAEVLALLEALNAEGLTLILVTHDDHHAARARRRIQMCDGRILSDRCQGLVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-26 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-26 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-26 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-26 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_008105914.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD NC_008702.1.4606598. Protein 4e-40 58
lolD YP_008105914.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD NC_012469.1.7686878. Protein 2e-40 48
lolD YP_008105914.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD CP001581.1.gene798.p Protein 2e-33 45
lolD YP_008105914.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD NC_012469.1.7685735. Protein 1e-28 42
lolD YP_008105914.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD CP001581.1.gene598.p Protein 3e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_008105914.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD VFG2059 Protein 9e-16 44