Gene Information

Name : copR (PCA10_35990)
Accession : YP_008103936.1
Strain : Pseudomonas resinovorans NBRC 106553
Genome accession: NC_021499
Putative virulence/resistance : Virulence
Product : two-component response regulator CopR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3952096 - 3952776 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACTGCTGATAGTCGAAGACGAGCCCAAGACCGGGCAGTTCCTGCGCCAGGGCATGAGCGAAGCCGGCCTGGCCGC
CGACCTCGCCACCAACGGCGTGGAGGGCCGTGACCTGGCGCTGGCCGGTGGCTACGACCTGATCATCCTCGATGTGATGC
TGCCCGACCTCGACGGCTGGCAGGTGCTGCGCAGCCTGCGCCAGGCCGGTCTGCAGGTCCCGGTGCTGTTCCTCACCGCG
CGGGATGCCGTGGAAGAACGCGTCCACGGCCTGGAACTGGGTGCCGACGACTACCTGATCAAGCCCTTCGCCTTCGCCGA
ACTCCTCGCCCGAGTGCGCACGCTGCTGCGGCGCGGTGCCACGACGGCCCAGGAAACCAGCCTGGAGCTCGCCGACCTGC
ACCTCGACCTGCTGAGCCGCAAGGTGGAGCGTGGCGGCCGGCGCATCGACCTCACCGCCAAGGAGTTCGCCCTGCTGGAG
TTCCTCCTGCGCCGCCAGGGCGAAGTGCTGCCCAAGACGCTGATCGCCGCGCAGGTCTGGGACATGCACTTCGACAGTGA
GACCAACATCATCGAAGTCGCCGTGCGCCGCCTGCGGGCCAAGCTGGACGACGACTTCCCCACCAAGCTGATCCATACCG
TGCGCGGCATGGGCTACGTGCTGGAGGCCCGGGAAGGCTGA

Protein sequence : 
MKLLIVEDEPKTGQFLRQGMSEAGLAADLATNGVEGRDLALAGGYDLIILDVMLPDLDGWQVLRSLRQAGLQVPVLFLTA
RDAVEERVHGLELGADDYLIKPFAFAELLARVRTLLRRGATTAQETSLELADLHLDLLSRKVERGGRRIDLTAKEFALLE
FLLRRQGEVLPKTLIAAQVWDMHFDSETNIIEVAVRRLRAKLDDDFPTKLIHTVRGMGYVLEAREG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-54 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-53 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_008103936.1 two-component response regulator CopR BAC0638 Protein 5e-64 69
copR YP_008103936.1 two-component response regulator CopR BAC0083 Protein 1e-71 68
copR YP_008103936.1 two-component response regulator CopR BAC0111 Protein 1e-70 66
copR YP_008103936.1 two-component response regulator CopR BAC0308 Protein 9e-65 63
copR YP_008103936.1 two-component response regulator CopR BAC0197 Protein 1e-60 62
copR YP_008103936.1 two-component response regulator CopR BAC0347 Protein 2e-62 61
copR YP_008103936.1 two-component response regulator CopR BAC0125 Protein 3e-60 58
copR YP_008103936.1 two-component response regulator CopR BAC0487 Protein 2e-27 41
copR YP_008103936.1 two-component response regulator CopR HE999704.1.gene1528. Protein 2e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_008103936.1 two-component response regulator CopR VFG0596 Protein 1e-54 57
copR YP_008103936.1 two-component response regulator CopR VFG1390 Protein 5e-40 48
copR YP_008103936.1 two-component response regulator CopR VFG1389 Protein 7e-31 41