|
Name : clpC (PCA10_35680) Accession : YP_008103905.1 Strain : Pseudomonas resinovorans NBRC 106553 Genome accession: NC_021499 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : - COG ID : - EC number : - Position : 3926164 - 3929007 bp Length : 2844 bp Strand : - Note : - DNA sequence : ATGGCCAGGAAACAATGCCAAATCTGCGGCCAACCCGCCACGACTCGGGTGGAAGCTAATCTCAATGGTCGCCGCACCAC CATGCTGTTGTGTGACGACCACTACCGCCAATTGGTGCGCCAGCAAAAACGCGCCATTTCCCCGCTGGAAGCCCTTTTCG GCTCGCGCAGCGGCTTGTTCGAAGACTTTCTCGGCAGTGATTTCTTCCGCATCGGCGAAGACTCGGCACCAGTTGCGGCT GATGCCGATGAAGTGGTCGATGCGTCGTTTGGCGAACCAGCCGCCACAGGGGCTGGCACCCCGCGCCGTCGCGGCAGCGG GCTGGCCAGCCGCATCAGCGAACACTCCGAGGCACTGTTGCAGGAAGCTGCGAAGCATGCTGCGGAGTTCGGTCGCTCCG AAGTCGATACGGAACACCTGCTGCTGGCGCTGGCCGACAGCGATGTGGTTAAGACCATCCTGAGCCAGTTTAAGATCAAG GTCGATGATCTAAAGCGCCAGATTGAAGCCGAAGCCAAGCGCGGCGACACGCCGTTTGAAGGCGAGATCGGCGTGTCGCC ACGCGTGAAGGATGCGCTTAGTCGCGCCTTCGTCGTATCCAATGAACTAGGACACTCATACGTCGGGCCCGAGCACTTCC TGATCGGTCTGGCCGAAGAGGGCGAAGGGCTGGCCGCCAACTTGTTGCGTCGCTATGGCCTTACGCCACAGGTCCTGCGC CAGCAAGTAAACAAGGTGGTCGGCAAAGGCGCGGAGGATGGTCGCGCCGAGACGCCGACCAATACGCCGGAGCTCGACAA GTACTCGCGCGATCTCACCAAAATGGCGCGTGAGGGCAAGCTGGATCCGGTCATCGGACGCGCGCAGGAAATCGAAACCA CCATAGAGGTTCTGGCGCGGCGCAAGAAGAACAACCCCGTATTGATCGGCGAGCCTGGCGTGGGCAAGACCGCCATCGTC GAGGGGTTGGCACAGCGCATGGTGGCCGGCGAGGTGCCCGAGACGCTGCGCGACAAGCGCCTGGTCGAGCTGAACATCAA TTCCATGGTGGCCGGGGCGAAGTACCGTGGCGAGTTCGAGGACCGCGTGCAGAAGGTGCTGAAGGAGATCTCCGAGCACC AGGGCGAGATGATTCTATTCATCGACGAGGTGCACACCATTGTTGGTGCCGGCCAGGGCGGTGGCGAAGGCGGGTTGGAC GTGGCCAACGTCTTCAAGCCGATGATGGCGCGCGGAGAGCTTAACCTGATCGGCGCGACGACGCTCAACGAGTACCAGAA GTATATCGAGAAGGACGCCGCGCTGGAGCGGCGCTTCCAGCCGGTCATGGTGCCCGAGCCAACCTTGGCGCAGACCATCA TGATCCTGCGCGGCCTGCGCGATACCTTCGAAGCGCACCACAAGGTCAGCATCACCGAGGACGCGATCATCGCGGCCGCC GAGCTGTCCGACCGCTATGTCACCGCGCGCTTCCTGCCGGACAAGGCCATCGATCTGCTCGATCAGGCTGCCGCACGCGT GAAGCTATCGGCGACGGCCCGCCCCGTTGCGGTGCAGGAGTTGGAGTCCGAACTGCACCAGTTGCGCCGGGAGCAGGACT ACGCGGCTTCCCGCAAGCAATACGACAATGCAGCGGAGATCGGCAAGCGCATTGAAGCAAAGCAGGCCGAACTCAAGAAG CTGGTCGAGGACTGGGAGCGCGAGCGCGGCTCGGGCAGCGCCGAAGTCAAGGCGGAACACGTGGCGCAGATCGTCTCGCG CCTGACCGGCATCCCCGTCAATGAGCTGACGGTGGAAGAGCGCGAGAAGCTGCTGCACCTGGAGCAGCGGCTGCACGAGC GCCTGGTGGGGCAGGACGAGGCGGTGCGGGCTGTGGCGGATGCGGTGCGGTTGTCGCGCGCGGGTCTGCGCGAAGGCAGC AAGCCCGTGGCCACGTTCCTGTTCCTGGGCCCCACCGGCGTCGGCAAGACCGAGCTCGCCAAGGCGCTGGCCGAATCCAT CTACGGCGACGAGGGCGCCCTGTTGCGCATCGACATGTCGGAGTACGGCGAGCGCCATACCGTGGCACGGCTGGTGGGCG CCCCCCCGGGCTACGTCGGCTACGATGAAGGCGGCCAGCTCACGGAGAAGGTCCGCCGCAAGCCCTACAGCGTGCTGCTG CTCGACGAGATCGAGAAGGCCCACCCCGACGTCTACAACATCCTGCTGCAGGTGTTCGACGACGGGCGGCTCACCGACGG CAAGGGGCGCGTGGTGGACTTCACCAACACCATTATCATCGCCACCTCCAATCTGGGATCCGACATTATTCAGCGCCGGT TGAAGACGCGCGGAGCGGCCGGCGAGGAGTACGAGAAGACCAAGACAGAGGTGATGGACGTGCTGCGCGGACACTTCCGC CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATTCGCCACATTGTCGGCCT GCAACTCGATCGCGTGGCCCGCAATGCCGCGAGCCAGGGCGTGATGCTGACGTTCGATGGGGCGTTGGTCGATCACTTCG CCGAAGAAGGCTACAAGCCCGAATTCGGTGCCCGCGAGCTCAAACGGCTGATCCGCAGCGAGCTGGAAACGGCACTGGCG CGCGAGATGCTCGGCGGCGGCATCGGCAAGGGTGATCATGCCTGTGCACGTTGGGACGACAAGGCGGAGCGGGTCGAGTT CGACCGAAAGCAACCCGCGCCGGCCAGCGACGAAGCGTCCGCCGAATCTGCGCAACCGCCGGGTTCGTCCAAGGAGACGA ACAAGGGGACGCGCAAGAGGAAGTCCGAAAGTAGCAAAGCCTGA Protein sequence : MARKQCQICGQPATTRVEANLNGRRTTMLLCDDHYRQLVRQQKRAISPLEALFGSRSGLFEDFLGSDFFRIGEDSAPVAA DADEVVDASFGEPAATGAGTPRRRGSGLASRISEHSEALLQEAAKHAAEFGRSEVDTEHLLLALADSDVVKTILSQFKIK VDDLKRQIEAEAKRGDTPFEGEIGVSPRVKDALSRAFVVSNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQVLR QQVNKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV EGLAQRMVAGEVPETLRDKRLVELNINSMVAGAKYRGEFEDRVQKVLKEISEHQGEMILFIDEVHTIVGAGQGGGEGGLD VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTLAQTIMILRGLRDTFEAHHKVSITEDAIIAAA ELSDRYVTARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYAASRKQYDNAAEIGKRIEAKQAELKK LVEDWERERGSGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGS KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKTRGAAGEEYEKTKTEVMDVLRGHFR PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVMLTFDGALVDHFAEEGYKPEFGARELKRLIRSELETALA REMLGGGIGKGDHACARWDDKAERVEFDRKQPAPASDEASAESAQPPGSSKETNKGTRKRKSESSKA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-164 | 47 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-93 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_008103905.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 7e-176 | 51 |
