Gene Information

Name : PCA10_35410 (PCA10_35410)
Accession : YP_008103878.1
Strain : Pseudomonas resinovorans NBRC 106553
Genome accession: NC_021499
Putative virulence/resistance : Unknown
Product : putative transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3902693 - 3903538 bp
Length : 846 bp
Strand : -
Note : -

DNA sequence :
GTGGAGTACCCGGTTCGACGTCTCTGCCAGACCCTGAAAGTGCATCCCAGCGGTTACTACGCCTGGCTGACCGAGCCGAA
ATCCGTACGCGCCAAGGAAGATCAGCGCCTACTCGGGTTGATCAAACATGCCTGGCTGGAAAGCGGTGGGGTCTACGGCT
ATCGCAAGATTCACGACGACCTGCGTGAGCTGGGGGAGTCCTGTGGCCGGCACCGCGTGGCTCGCCTGATGCGAGGAGAA
GGGCTGCGCTCACAGACCGGCTATCGGCGGCGCCCCGGCTATTACGGCGGCCGGCCAACGGTGGCTTCGCCCAATCGCCT
GGAGCGGCAATTCAACGTTAGTGAACCGAACAAGGTCTGGGTCACCGACATCACCTACATCCGCACCTATGAAGGCTGGC
TGTATTTGGCGGTGGTGCTGGATCTGTTTTCACGCCAGGTGATCGGCTGGTCGATGAAGCCACGGATGTGCAGCGACCTG
GCTATCGATGCCCTGTTGATGGCGGTGTGGCGGCGCAAGCCCAAGCAGGAAGTGATGATCCACTCCGACCAGGGCAGCCA
GTTCAGCAGCTCGGACTGGCAGAGCTTCCTCAAGGCCAACAACCTGATCAGCAGCATGAGTCGACGCGGTAACTGCCACG
ACAACGCGGTGGCGGAAAGCTTTTTCCAGTTGCTGAAGCGGGAACGCATCCGACGAAAAACCTACGGCACCCGCGAAGAA
GCCCGGAGTGATGTGTTCGATTACATCGAGATGTTTTATAACCCCAAACGCCGGCACAGCAGCGCTATGCAGCTATCGCC
AGTGGAGTTTGAAAAGCGTTATTTCCAGAGCTTGGAGAGTGTCTAG

Protein sequence :
MEYPVRRLCQTLKVHPSGYYAWLTEPKSVRAKEDQRLLGLIKHAWLESGGVYGYRKIHDDLRELGESCGRHRVARLMRGE
GLRSQTGYRRRPGYYGGRPTVASPNRLERQFNVSEPNKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDL
AIDALLMAVWRRKPKQEVMIHSDQGSQFSSSDWQSFLKANNLISSMSRRGNCHDNAVAESFFQLLKRERIRRKTYGTREE
ARSDVFDYIEMFYNPKRRHSSAMQLSPVEFEKRYFQSLESV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpB CAB61574.1 transposase B Not tested HPI Protein 1e-38 45
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 1e-38 45
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-44 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 5e-44 44
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-44 44
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 2e-46 43
unnamed CAI43898.1 putative transposase Not tested LEE Protein 9e-31 42
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 9e-31 42
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-40 42
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-40 42
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-40 42
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 3e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCA10_35410 YP_008103878.1 putative transposase VFG1631 Protein 1e-46 43