|
Name : LRI_0054 (LRI_0054) Accession : YP_008098408.1 Strain : Lactobacillus reuteri I5007 Genome accession: NC_021494 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : - COG ID : - EC number : - Position : 52076 - 54313 bp Length : 2238 bp Strand : + Note : COG: COG0542 DNA sequence : ATGGCTCAAAACCCAATGAATCCATTTGACAACGACATGAATGACATTTTTAATCAATTAATGGGTGGCATGAATGGTTT CAATTCTGATAATCGGCGTTACCTAATCAATGGTCGTGATGTGACACCAGAAGAATTTGCTGAATATCGTAGAACTAGTC AATTGCCAGGCGGTGCAAATCCTCAACAAGGTGGGCAACCTGGCCCTCAACCTAACGCAGGTAAGGACAGTATCTTACAC AAGTTAGGTCGAAACTTAACTCAAGAAGCTCGTGAACATGAACTTGACCCTGTTATTGGTCGGAACAAGGAAATCCAAGA AACAGCTGAAATTTTAAGCCGGCGGACAAAGAACAACCCTGTATTAGTTGGGGACGCTGGTGTTGGTAAGACTGCTGTTG TTGAAGGATTAGCACAAGCAATTGTTTCCGGCGATGTACCAGCTGCTATCAAGGACAAGGAAATTATCAGTATCGATATT TCTGGTCTTGAAGCAGGTACCCAATACCGTGGTAGCTTTGAAGAAAACATGCAAAAGTTGGTTGATGAAGTCAAGAAGGC TGGAAACATCATCCTCTTCTTTGATGAAATTCACCAAATTATCGGTGCCGGTTCAACTGGTGATTCTAGTGGTTCTAAGG GTATGTCTGACATTATTAAGCCAGCATTATCCCGTGGTGAACTAACAGTTATCGGTGCAACTACTCAAGATGAATACCGG AACACTATTATGAAGGATGCTGCATTAGCACGGCGGTTCAATGCTGTTACTGTTAATGCTCCAAGCAAGGCTGATACTGT AGCTATTCTTAAAGGTATCCGTGACTTGTACGAACGTCACCACAATGTAAAGTTACCAGATGACGTTCTCCAAGCTGCTG TTGATTACTCTGTTCAATACATGCCACAACGTGCATTACCTGACAAGGCTATCGACTTAATCGATATGACTGCTGCTCAC TTAGCAGCAAAGCACCCAGCACGTGATGCTAAGGTAATTGAAAAAGACATCGAAGCAGAAGAAAAGAAGCAAAAAGCGGC TGCTAAGAAAGAAGATTACAAGGCTGCTCAAGATGCCAAGGAAAAGATTGCTGACTTGAAGAAGCAATTGAGTGAAAACT CTGAATCTGAAAAGGTTACTGCTACTCCAGAAGACGTTGCTAAGGCTGTAGAACAAATGACTGGTATTCCTGTTTCTAAG ATTGGTGCTAGTGACGTTGAACGTCTAAAGGACATGGACAAGCGGCTTGAAGGCAAGGTTATTGGCCAAGACAAAGCTGT TGAAGCAGTTGCTCGTGCTATTCGTCGTAACCGTGCTGGATTTGACGAAGGCGATTCACCAATTGGTAGTTTCCTCTTTG TTGGACCTACTGGTGTTGGTAAGACTGAACTTGCTAAGCAATTAGCCTTTGATATGTTTGGCAGCAAAGACGATATTATT CGGTTAGATATGTCTGAATACTCTGACCGGACAGCTGTATCTAAGATGATCGGTGCTACTGCTGGTTATGTTGGTTATGA AGACAACGGTAATACCTTGACTGAAAAGGTTCGTCGTCACCCTTATTCAATTATTCTTCTTGATGAAATTGAAAAGGCTA ACCCACAAGTTATCACCCTCTTGCTTCAAGTACTTGATGATGGTCGCTTAACTGATGGACAAGGTAACACTATTGACTTT AAGAATACTGTTATCATTGCTACATCAAACGCCGGCTACTCCAACGATGCTCCAGTTAAGATGGGTCGGAACGAAGATGA AGAAGACTTAATTAAGAAGTTGACTACTTACTTCCGTCCTGAATTCTTGAACCGGTTCAACGCCATTGTTGAATTCCACA ATTTGACTAAGGAAGACTTGAAGCAAATCGTTGACTTAATGCTTGCTGAAGTTAACCGGACATTAGCTAAGAAGGGAATG CATGTTAAGGTTACTGATGCTGCAAAGCAATACCTTATTGATGAAGGTTACGATGAAGCCATGGGTGCTCGTCCTCTTCG TCGGGTTATCGAACGTGAAATCCGTGATAAGGTAACTGATTACTACCTTGACCACCTCGATGCAAAGAACCTTGTTGCTG AAATGAAGGATGGCCAACTTGTAATTGTTGACGCTAAGGACGCCTCAAAAGACGATAGTAAAGAATATACCTCACCATCT GAAAAGAAGGATGAAGAAAAAAACGATAAGAAGGAAGAAGACAAGAAGTCTGACGAAGATAAGAAAGACGAAAAGTAA Protein sequence : MAQNPMNPFDNDMNDIFNQLMGGMNGFNSDNRRYLINGRDVTPEEFAEYRRTSQLPGGANPQQGGQPGPQPNAGKDSILH KLGRNLTQEAREHELDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVSGDVPAAIKDKEIISIDI SGLEAGTQYRGSFEENMQKLVDEVKKAGNIILFFDEIHQIIGAGSTGDSSGSKGMSDIIKPALSRGELTVIGATTQDEYR NTIMKDAALARRFNAVTVNAPSKADTVAILKGIRDLYERHHNVKLPDDVLQAAVDYSVQYMPQRALPDKAIDLIDMTAAH LAAKHPARDAKVIEKDIEAEEKKQKAAAKKEDYKAAQDAKEKIADLKKQLSENSESEKVTATPEDVAKAVEQMTGIPVSK IGASDVERLKDMDKRLEGKVIGQDKAVEAVARAIRRNRAGFDEGDSPIGSFLFVGPTGVGKTELAKQLAFDMFGSKDDII RLDMSEYSDRTAVSKMIGATAGYVGYEDNGNTLTEKVRRHPYSIILLDEIEKANPQVITLLLQVLDDGRLTDGQGNTIDF KNTVIIATSNAGYSNDAPVKMGRNEDEEDLIKKLTTYFRPEFLNRFNAIVEFHNLTKEDLKQIVDLMLAEVNRTLAKKGM HVKVTDAAKQYLIDEGYDEAMGARPLRRVIEREIRDKVTDYYLDHLDAKNLVAEMKDGQLVIVDAKDASKDDSKEYTSPS EKKDEEKNDKKEEDKKSDEDKKDEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 6e-125 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LRI_0054 | YP_008098408.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 3e-140 | 49 |
| LRI_0054 | YP_008098408.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 6e-134 | 48 |
