Gene Information

Name : LRI_0031 (LRI_0031)
Accession : YP_008098385.1
Strain : Lactobacillus reuteri I5007
Genome accession: NC_021494
Putative virulence/resistance : Unknown
Product : alpha/beta knot family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 32916 - 33404 bp
Length : 489 bp
Strand : +
Note : COG: COG1576

DNA sequence :
GTGGATATCTTGAATATAAAAATTATTGGTGTGGGTAAGTTAAAAGAAAAGTATTTTAAAGCGGGAATTGCTGAATATGC
TAAACGACTTGGACGTTATTGTAAATTTGAAATTGTTGAGGTTCCTGATGAAAAAGCACCTGAATCTTTAAGCCAAGCAG
AAATGGATGAGGTAATGGCAAAGGAGGGGGAACGGATTCTTGATAAAATCAAAGATCGCGAATATGTATATGCTTTAGCG
ATTAAAGGTAAAGAACGTTCTTCTGAAGAGTTTGCAAAAGAAATCAATAAATTAACAACTTATGGTCACAGTGATATTAC
TTTTGTGATCGGGGGTTCGTTAGGCTTAAGTCCAGCAGTATTAAAACGGGCAGATGCTCAAATCTCGTTTGGACGTTTTA
CCTTGCCTCATCAATTAATGCGTTTAGTTTTAAGCGAACAAATTTATCGAGCTTTTACCATCATCAATGGCCTCCCATAT
CATAAATAA

Protein sequence :
MDILNIKIIGVGKLKEKYFKAGIAEYAKRLGRYCKFEIVEVPDEKAPESLSQAEMDEVMAKEGERILDKIKDREYVYALA
IKGKERSSEEFAKEINKLTTYGHSDITFVIGGSLGLSPAVLKRADAQISFGRFTLPHQLMRLVLSEQIYRAFTIINGLPY
HK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 4e-41 58
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-41 58
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 7e-41 57
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 7e-41 57
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-40 57
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 7e-41 57
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 7e-41 57
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 7e-41 57
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-40 57
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 7e-41 57
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 7e-41 57
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 7e-41 57
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 7e-41 57
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 7e-41 57
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 6e-41 56
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 3e-37 56
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 9e-41 56
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-40 55