Gene Information

Name : H650_00010 (H650_00010)
Accession : YP_008098219.1
Strain :
Genome accession: NC_021492
Putative virulence/resistance : Unknown
Product : transposase IS401
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 474 - 1211 bp
Length : 738 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGCTGACCGGGCAGATCAAACAGTTCTGGCTTGAGTCTGGCTGCGTCTATGGTTATCGCAAGATCCATCTCGATCTGCG
TGATACCGGGCAGCAGTGCGGAGTGAACCGGGTCTGGCGGCTGATGAAGCGTGCCGGAATAAAAGCTCAGGTTGGGTACC
GTAGCCCACGAGCACGTAAAGGCGAAGCCAGCATCGTGACACCCAACAGGCTCCAGCGGCAGTTCAATCCGGACTCACCT
GATGAGCGTTGGGTGACGGACATAACCTACATCCGAACCCACGAAGGCTGGCTGTATCTGGCCGTGGTGGTTGACCTGTT
CTCCCGAAAAGTTATCGGCTGGTCAATGCAACCCCGCATGACAAAAGAGATTGTCCTGAACGCATTACTTATGGCGGTGT
GGAGGCGTAATCCTCAAAAGCAGGTACTGGTTCACTCTGATCAGGGCAGTCAGTACACGAGCCATGAGTGGCAGTCGTTC
CTGAGATCACACGGTCTGGAAGGCAGCATGAGTCGTCGCGGTAACTGCCACGACAACGCGGTTGCGGAAAGCTTTTTCCA
GCTACTGAAACGCGAACGGATTAAGAAAAGGATCTACGGAACGAGAGACGAAGCCAGAAGCGATATTTTTGATTACATCG
AAATGTTTTATAACAGTAAGCGTCGGCATGGTTCGAGCGAGCAGATGCCACCGGCTGAATATGAAAACCTGTATTATCAA
CGGCTCAGAAGTGTCTAG

Protein sequence : 
MLTGQIKQFWLESGCVYGYRKIHLDLRDTGQQCGVNRVWRLMKRAGIKAQVGYRSPRARKGEASIVTPNRLQRQFNPDSP
DERWVTDITYIRTHEGWLYLAVVVDLFSRKVIGWSMQPRMTKEIVLNALLMAVWRRNPQKQVLVHSDQGSQYTSHEWQSF
LRSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKRIYGTRDEARSDIFDYIEMFYNSKRRHGSSEQMPPAEYENLYYQ
RLRSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 6e-43 44
tnpB CAB61574.1 transposase B Not tested HPI Protein 9e-44 44
unnamed AAC31485.1 L0006 Not tested LEE Protein 1e-28 44
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 2e-28 44
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 1e-28 44
unnamed CAI43898.1 putative transposase Not tested LEE Protein 1e-29 44
Z5089 NP_290241.1 transposase Not tested LEE Protein 2e-28 44
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 1e-29 44
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 3e-41 44
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 4e-41 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-40 44
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 1e-29 44
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-30 42
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-30 42
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-30 42
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-30 42
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-30 42
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-30 42
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-30 42
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 1e-30 42
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 9e-30 41
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 9e-30 41
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-35 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-35 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H650_00010 YP_008098219.1 transposase IS401 VFG0785 Protein 7e-29 44
H650_00010 YP_008098219.1 transposase IS401 VFG1122 Protein 9e-31 42
H650_00010 YP_008098219.1 transposase IS401 VFG1484 Protein 5e-30 41