Gene Information

Name : L483_04030 (L483_04030)
Accession : YP_008092635.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 861606 - 862280 bp
Length : 675 bp
Strand : -
Note : induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistanc

DNA sequence : 
ATGCGTGTGCTGATCATCGAAGACGAAGAAAAAACCGCCGACTACCTGCATCGCGGCCTGAGCGAACAGGGCTTTACCGT
TGACCTGGCACGGGACGGTATCGATGGCCTGCACCTGGCCCTGGAGGGCGACTATGCGGTGATCGTGCTGGATGTGATGC
TGCCTGGCCTGGACGGCTATGGCGTGCTGCGCGCCTTGCGCGCACGCAAGCAGACGCCGGTGATCATGCTGACCGCCCGT
GAACGGGTCGAAGACCGCATTCATGGCTTGCGTGAGGGCGCCGACGACTATCTGGGCAAGCCGTTCTCGTTCCTTGAACT
GGTCGCCCGCCTGCAGGCCCTGACCCGGCGCAGCAGCAGCCATGAACCGTTGCAGGTGCAGGTGGCAGACCTGTGGATCG
ACCTGATGGCCCGCAAGGCCACACGCGCCGGGCAGCGCCTGGACCTGACGGCCAAAGAGTTCTCGCTGCTCAGCGTGCTG
GCCCGGCGGCAGGGTGAAATCTTGTCGAAAACGGCGATTGCCGAACTGGTCTGGGACATCAACTTCGACAGCGACGCCAA
CGTCGTGGAAGTGGCAATCAAACGCCTGCGCGCCAAGCTCGACGGGCCCTTCGACAACAAGCTGCTGCACACCATCCGAG
GCATGGGCTATGTCCTGGAAAACCGCGCGGGGTAA

Protein sequence : 
MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGYGVLRALRARKQTPVIMLTAR
ERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSSSHEPLQVQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVL
ARRQGEILSKTAIAELVWDINFDSDANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLENRAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-55 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-54 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_04030 YP_008092635.1 transcriptional regulator BAC0125 Protein 1e-62 57
L483_04030 YP_008092635.1 transcriptional regulator BAC0083 Protein 2e-57 57
L483_04030 YP_008092635.1 transcriptional regulator BAC0197 Protein 9e-59 56
L483_04030 YP_008092635.1 transcriptional regulator BAC0111 Protein 2e-58 54
L483_04030 YP_008092635.1 transcriptional regulator BAC0638 Protein 1e-50 54
L483_04030 YP_008092635.1 transcriptional regulator BAC0308 Protein 9e-55 51
L483_04030 YP_008092635.1 transcriptional regulator BAC0347 Protein 1e-51 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_04030 YP_008092635.1 transcriptional regulator VFG0596 Protein 7e-56 54
L483_04030 YP_008092635.1 transcriptional regulator VFG1389 Protein 1e-37 47
L483_04030 YP_008092635.1 transcriptional regulator VFG1386 Protein 7e-35 44